FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.451e-53
Identity = 111/162 (68.52%), Postives = 123/162 (75.93%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L ++ P+G LLVG PGTGKTLLA+AVAGEA VPF SC+ASEFVEL+VG+GASRVRDLF +AK +AP I+FIDEIDAV            NDEREQT+NQLLTEMDGF  NS VIVL ATNR DVLD AL RPGRFDR VTV+ PD  GR  IL VH   K L
Sbjct:  353 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKEL 514          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.214e-52
Identity = 100/156 (64.10%), Postives = 119/156 (76.28%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L +KIP+G +L GPPGTGKTLLA+A AGEA VPF S + SEF+E+FVGVG SRVRDLF  A+  APCI+FIDEIDA+            NDERE T+NQLL EMDGF+ +  ++V A TNRPDVLD ALLRPGRFDRQ+T+DRPD+ GR +I  VH
Sbjct:  324 LGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVH 479          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.214e-52
Identity = 100/156 (64.10%), Postives = 123/156 (78.85%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L +KIPKG LLVGPPGTGKTLLA+A AGE+GVPF S + S+F+E+FVGVG SRVR+LF++A+  AP I+FIDEIDA+            NDERE T+NQLL EMDGF   SGV+VLA TNRPD+LD ALLRPGRFDRQ+T+D+PD+ GR +I  ++
Sbjct:  363 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGSNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFRIY 518          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.533e-52
Identity = 109/162 (67.28%), Postives = 123/162 (75.93%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L ++ P+G LLVG PGTGKTLLA+AVAGE+ VPF SC+ASEFVEL+VG+GASRVRDLF +AK +AP I+FIDEIDAV            NDEREQT+NQLLTEMDGF  +S VIVL ATNR DVLD AL RPGRFDR VTV+ PD  GR  IL VH   K L
Sbjct:  357 LGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKEL 518          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.343e-51
Identity = 98/156 (62.82%), Postives = 122/156 (78.21%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L +KIPKG LLVGPPGTGKTLLA+A AGE+ VPF S + S+F+E+FVGVG SRVR+LF++A+  AP I+FIDEIDA+            NDERE T+NQLL EMDGF   +GV+VLA TNRPD+LD ALLRPGRFDRQ+T+D+PD+ GR +I  ++
Sbjct:  355 LGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIY 510          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.290e-51
Identity = 98/156 (62.82%), Postives = 123/156 (78.85%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            L +KIPKG LLVGPPGTGKTLLA+A AGE+GVPF S + S+F+E+FVGVG SRVR+LF++A+  +P IVFIDEIDA+            +DERE T+NQLL EMDGF   SGV+VLA TNRPD+LD ALLRPGRFDRQ+++D+PD+ GR +I  ++
Sbjct:  348 LGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCSPSIVFIDEIDAIGRARGRGGFSGGHDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFRIY 503          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.907e-51
Identity = 102/159 (64.15%), Postives = 121/159 (76.10%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV--XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            T L +KIP+G +L GPPGTGKTLLA+A AGEA VPF S + SEFVE+FVGVGASRVRDLF +A+S AP I+FIDEIDA+             NDERE T+NQLL EMDGF+ +  V+VLA TNRPDVLD+AL+RPGRFDR + +D PDV GR +I  VH
Sbjct:  314 TKLGAKIPRGAILSGPPGTGKTLLAKATAGEANVPFLSVSGSEFVEMFVGVGASRVRDLFTQARSMAPSIIFIDEIDAIGKERGKGGALGGANDEREATLNQLLVEMDGFTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVH 472          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.102e-51
Identity = 108/162 (66.67%), Postives = 122/162 (75.31%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L ++ P+G LLVG PGTGKTLLA+AVAGEA VPF SC+ASEFVEL+VG+GA+RVRDLF +AK ++P I+FIDEIDAV            NDEREQT+NQLLTEMDGF  NS VIVL ATNR DVLD AL RPGRFDR V V+ PD  GR  IL VH   K L
Sbjct:  374 LGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGAARVRDLFARAKKESPSIIFIDEIDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKEL 535          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 8.703e-51
Identity = 97/162 (59.88%), Postives = 123/162 (75.93%), Query Frame = 2
Query:    5 ALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            A  ++ PKG LL GPPGTGKTLLA+A AGEA VPFF  +AS FVEL+VG+GA RVR++F++A+  AP I+FIDE+DAV           NDEREQT+NQ+L EMDG + N+G++++ ATNR DVLD ALLRPGRFDR +TV  PD+  R +IL +HS+GK L
Sbjct:  239 AAGARFPKGILLGGPPGTGKTLLAKATAGEANVPFFFISASSFVELYVGLGAKRVREMFKEARKLAPAIIFIDELDAVGRSRGSGIGGGNDEREQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRFDRIITVGLPDIKEREEILKLHSKGKRL 400          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.319e-50
Identity = 95/157 (60.51%), Postives = 115/157 (73.25%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L +KIPKG +L GPPGTGKTLLA+A AGEA VPF + + SEF+E+FVGVG +RVRDLF  A+  APCI+FIDEIDAV             E+E T+NQLL EMDGF+  + V++LA TNRPD+LD ALLRPGRFDRQ+ +  PD+ GR  I  VH R
Sbjct:  335 LGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLR 491          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH7_ARATH5.451e-5368.52Cell division protease ftsH homolog 7, chloroplast... [more]
RCA1_SCHPO1.214e-5264.10Mitochondrial respiratory chain complexes assembly... [more]
FTSH8_ORYSJ1.214e-5264.10Cell division protease ftsH homolog 8, mitochondri... [more]
FTSH9_ARATH3.533e-5267.28Cell division protease ftsH homolog 9, chloroplast... [more]
FTSHA_ARATH1.343e-5162.82Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH3_ORYSJ2.290e-5162.82Cell division protease ftsH homolog 3, mitochondri... [more]
AFG3_YEAST3.907e-5164.15Mitochondrial respiratory chain complexes assembly... [more]
FTSH7_ORYSJ5.102e-5166.67Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH_MYCPU8.703e-5159.88Cell division protease ftsH homolog OS=Mycoplasma ... [more]
AFG32_MOUSE4.319e-5060.51AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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