FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 4.319e-50
Identity = 95/157 (60.51%), Postives = 115/157 (73.25%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L +KIPKG +L GPPGTGKTLLA+A AGEA VPF + + SEF+E+FVGVG +RVRDLF  A+  APCI+FIDEIDAV             E+E T+NQLL EMDGF+  + V++LA TNRPD+LD ALLRPGRFDRQ+ +  PD+ GR  I  VH R
Sbjct:  336 LGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLR 492          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 7.368e-50
Identity = 97/157 (61.78%), Postives = 116/157 (73.89%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            T L  K+PKG LLVGPPGTGKT+LARA+AGEAGVPFFSC+ SEF E+FVGVGA RVRDLF  AK ++PCI+F+DEIDA+               + T+NQLL E+DGF  N G+IV+AATN P+ LD AL+RPGRFDR + V  PDV GR +IL  H
Sbjct:  256 TRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAI---GGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESH 409          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 7.368e-50
Identity = 94/157 (59.87%), Postives = 115/157 (73.25%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L +KIPKG +L GPPGTGKTLLA+A AGEA VPF + + SEF+E+FVGVG +RVRDLF  A+  APCI+FIDEIDAV             E+E T+NQLL EMDGF+  + V++LA TNRPD+LD AL+RPGRFDRQ+ +  PD+ GR  I  VH R
Sbjct:  337 LGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLR 493          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.257e-49
Identity = 96/154 (62.34%), Postives = 117/154 (75.97%), Query Frame = 2
Query:   14 SKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            +KIP+G +L GPPGTGKTLLA+A AGEAGVPF+  + SEFVE+FVGVGA+RVRDLF+ A+  AP IVFIDEIDA+            NDERE T+NQ+L EMDGF+    V+VLA TNRPD+LD ALLRPGRFDR + +D+P++ GR  I  VH
Sbjct:  378 AKIPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVH 531          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.641e-49
Identity = 98/157 (62.42%), Postives = 114/157 (72.61%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            T L  K+PKG LLVGPPGTGKT+LARAVAGEAGVPFFSC+ SEF E+FVGVGA RVRDLF  AK ++PCI+F+DEIDA+                 T+NQLL E+DGF  N G+IV+AATN P  LD AL+RPGRFDR + V  PDV GR +IL  H
Sbjct:  249 THLGGKLPKGVLLVGPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAI---GGSRNPKDQQYMRMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESH 402          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.144e-49
Identity = 98/154 (63.64%), Postives = 117/154 (75.97%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKIL 463
            T L  K+PKG LLVGPPGTGKTLLARAVAGEA VPF+  + SEF E+FVGVGASR+R+LF +AK+ APC++FIDE+D+V           +    QTINQLL EMDGF  N GVI++ ATN P+ LD+AL+RPGRFD QVTV RPDV GR +IL
Sbjct:  307 TVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEIL 458          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 2.144e-49
Identity = 97/157 (61.78%), Postives = 115/157 (73.25%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            T L  K+PKG LLVGPPGTGKT+LARA+AGEAGVPFFSC+ SEF E+FVGVGA RVRDLF  AK  +PCI+FIDEIDA+               + T+NQ+L E+DGF  N G+IV+AATN P+ LD AL+RPGRFDR + V  PDV GR +IL  H
Sbjct:  253 TRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAI---GGSRNPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESH 406          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 2.800e-49
Identity = 98/154 (63.64%), Postives = 117/154 (75.97%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKIL 463
            T L  K+PKG LLVGPPGTGKTLLARAVAGEA VPF+  + SEF E+FVGVGASR+R+LF +AK+ APC++FIDE+D+V           +    QTINQLL EMDGF  N GVI++ ATN P+ LD+AL+RPGRFD QVTV RPDV GR +IL
Sbjct:  365 TILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEIL 516          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.657e-49
Identity = 99/163 (60.74%), Postives = 118/163 (72.39%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            T L  K+PKG LL G PGTGKTLLA+A+AGEAGVPFF  A SEF E+FVGVGA RVR LF+ AK KAPCI+FIDEIDAV               ++T++QLL EMDGF  N G+IV+AATN PD+LD AL RPGRFDR + V  PDV GR +IL ++ +GK +
Sbjct:  388 TRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV----GSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPM 546          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: YME1_CAEEL (Protein YME1 homolog OS=Caenorhabditis elegans GN=ymel-1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 4.776e-49
Identity = 104/164 (63.41%), Postives = 122/164 (74.39%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILH------VHSRG 481
            L  ++PKG LLVGPPGTGKTLLARA+AGEA VPFF  A SEF E+ VG GA RVRDLF+KAK++APCI+FIDEID+V           +    QTINQLL+EMDGF+ N G+IV+AATNR D LD ALLRPGRFD +VTV +PD+AGRV I +      VHS G
Sbjct:  229 LGGRLPKGVLLVGPPGTGKTLLARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEIDSV--GSKRVSNSIHPYANQTINQLLSEMDGFTRNEGIIVIAATNRVDDLDKALLRPGRFDVRVTVPKPDLAGRVDIFNFYLSKIVHSGG 390          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
AFG32_HUMAN4.319e-5060.51AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
FTSH5_ORYSJ7.368e-5061.78Cell division protease ftsH homolog 5, mitochondri... [more]
AFG32_BOVIN7.368e-5059.87AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
RCA1_YEAST1.257e-4962.34Mitochondrial respiratory chain complexes assembly... [more]
FTSH4_ORYSJ1.641e-4962.42Cell division protease ftsH homolog 4, mitochondri... [more]
YMEL1_MOUSE2.144e-4963.64ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
FTSH4_ARATH2.144e-4961.78Cell division protease ftsH homolog 4, mitochondri... [more]
YMEL1_HUMAN2.800e-4963.64ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
FTSHB_ARATH3.657e-4960.74Cell division protease ftsH homolog 11, chloroplas... [more]
YME1_CAEEL4.776e-4963.41Protein YME1 homolog OS=Caenorhabditis elegans GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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