FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 8.146e-49
Identity = 92/157 (58.60%), Postives = 114/157 (72.61%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            L +KIPKG +L GPPGTGKTLLA+A AGEA VPF +   SEF+E+FVGVG +RVRD+F  A+  APCI+FIDEIDA+             E+E T+NQ+L EMDGF+ ++ V+VLA TNRPD+LD AL RPGRFDRQ+ +  PD+ GR  I  VH R
Sbjct:  328 LGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLR 484          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.815e-48
Identity = 99/161 (61.49%), Postives = 116/161 (72.05%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGK 484
            T L  K+PKG LL G PGTGKTLLA+A+AGEAGVPFF  A SEF E+FVGVGA RVR LF+ AK KAPCIVFIDEIDAV               ++T++QLL EMDGF  N G+IV+AATN PD+LD AL RPGRFDR + V  PDV GR +IL ++ + K
Sbjct:  354 TRLGGKLPKGILLTGSPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIVFIDEIDAV----GSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 510          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.370e-48
Identity = 97/154 (62.99%), Postives = 116/154 (75.32%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKIL 463
            T L  K+PKG LLVGPPGTGKTLLARAVAGEA VPF+  + SEF E+FVGVGASR+R+LF +AK+ APC++FIDE+D+V           +    QTI QLL EMDGF  N GVI++ ATN P+ LD+AL+RPGRFD QVTV RPDV GR +IL
Sbjct:  307 TVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSV--GGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEIL 458          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.370e-48
Identity = 95/159 (59.75%), Postives = 115/159 (72.33%), Query Frame = 2
Query:   14 SKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            ++ P+G +L GPPGTGKTLLA+AVAGEAGVPFF    S F ++ VGVGA RVRDLF KAK  APCI+FIDEID+V               EQT+NQLL EMDGF+  +GV+V+AATNR DVLD ALLRPGRFDR + ++ PD+  R  IL VH++ K L
Sbjct:  258 ARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNL 416          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 5.280e-48
Identity = 95/159 (59.75%), Postives = 114/159 (71.70%), Query Frame = 2
Query:   14 SKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            ++ P+G +L GPPGTGKTLLA+AVAGEAGVPFF    S F ++ VGVGA RVRDLF KAK  APCI+FIDEID+V               EQT+NQLL EMDGF+  +GV+V+AATNR DVLD ALLRPGRFDR + ++ PD+  R  IL VH+  K L
Sbjct:  261 ARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAENKNL 419          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.438e-45
Identity = 92/158 (58.23%), Postives = 113/158 (71.52%), Query Frame = 2
Query:    5 ALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            +L  K+PKG LL GPPGTGKTLLARA AGEAGV FF  + SEF E++VGVGA R+RDLF +A+S+AP I+FIDE+DA+               +QT+NQLL E+DGFS  SG+I++ ATN P+ LD AL RPGRFD+ V VD PDV GR  IL  H +
Sbjct:  308 SLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAY---AKQTLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMK 462          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.998e-43
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L +K+PKG LL+GPPG GKTLLA+AVA EA VPF + A  EFVE+  G+GA+RVR LF++A+++APCIV+IDEIDAV            N E EQT+NQLL EMDG      VIVLA+TNR DVLD+AL+RPGR DR V +D P +  R +I   H +G  L
Sbjct:  337 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKL 498          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.114e-43
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L +K+PKG LL+GPPG GKTLLA+AVA EA VPF + A  EFVE+  G+GA+RVR LF++A+++APCIV+IDEIDAV            N E EQT+NQLL EMDG      VIVLA+TNR DVLD+AL+RPGR DR V +D P +  R +I   H +G  L
Sbjct:  337 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKL 498          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.538e-42
Identity = 90/162 (55.56%), Postives = 112/162 (69.14%), Query Frame = 2
Query:    8 LPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAV-XXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            L +K+PKG LL+GPPG GKTLLA+AVA EA VPF + A  EFVE+  G+GA+RVR LF++A+++APCIV+IDEIDAV            N E EQT+NQLL EMDG      VIVLA+TNR D+LD AL+RPGR DR V +D P +  R +I   H +   L
Sbjct:  337 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL 498          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.149e-41
Identity = 86/153 (56.21%), Postives = 107/153 (69.93%), Query Frame = 2
Query:   14 SKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            +K+PKG LLVGPPG GKTLLA+AV+GEA VPF   + S F E+ VG+GASR+R LF  AK  +PC+VFIDEID+V           +    QTINQLL EMDGF    G+IVL ATN+ +VLD ALLRPGRFD Q+ V  P   GR+ +L+++
Sbjct:  196 AKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSV--GGNRTFSPHHPFANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLY 346          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
AFG31_MOUSE8.146e-4958.60AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
FTSH9_ORYSJ1.815e-4861.49Cell division protease ftsH homolog 9, chloroplast... [more]
YMEL1_RAT2.370e-4862.99ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
FTSH_MYCPN2.370e-4859.75Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_MYCGE5.280e-4859.75Cell division protease ftsH homolog OS=Mycoplasma ... [more]
YME1_YEAST1.438e-4558.23Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
SPG7_MOUSE2.998e-4356.79Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SPG7_RAT5.114e-4356.79Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
SPG7_HUMAN2.538e-4255.56Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
YME1_SCHMA2.149e-4156.21Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
back to top