FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.787e-41
Identity = 88/163 (53.99%), Postives = 110/163 (67.48%), Query Frame = 2
Query:    2 TALPSKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSG----VIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            T L  K+P+G LL GPPGTGKT+LARAVAGEA VPFF  + S+F E++VGVGA RVR+LF  A+ +AP I+FIDE+DA+                QT+NQLL ++DGFS N      V+ + ATN P+ LD AL RPGRFDR + V  PDV GR+ IL  H+R
Sbjct:  293 TRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARDAA---HMRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTR 452          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.393e-40
Identity = 82/151 (54.30%), Postives = 103/151 (68.21%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHS 475
            PKG LL GPPGTGKTLLA+AVA E    F     SE V+ F+G GA  VRD+F+ AK K+PCI+FIDEIDAV           + E ++T+ QLL EMDGF     V ++AATNRPD+LD A+LRPGRFDR + +  PD  GR++IL +H+
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHT 332          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.393e-40
Identity = 82/151 (54.30%), Postives = 103/151 (68.21%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHS 475
            PKG LL GPPGTGKTLLA+AVA E    F     SE V+ F+G GA  VRD+F+ AK K+PCI+FIDEIDAV           + E ++T+ QLL EMDGF     V ++AATNRPD+LD A+LRPGRFDR + +  PD  GR++IL +H+
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHT 332          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.376e-40
Identity = 82/151 (54.30%), Postives = 102/151 (67.55%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHS 475
            PKG LL GPPGTGKTLLA+AVA E    F     SE V+ F+G GA  VRD+F+ AK K+PCI+FIDEIDAV           + E ++T+ QLL EMDGF     V ++AATNRPD+LD A+LRPGRFDR + +  PD  GR+ IL +H+
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHT 332          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.376e-40
Identity = 82/151 (54.30%), Postives = 102/151 (67.55%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHS 475
            PKG LL GPPGTGKTLLA+AVA E    F     SE V+ F+G GA  VRD+F+ AK K+PCI+FIDEIDAV           + E ++T+ QLL EMDGF     V ++AATNRPD+LD A+LRPGRFDR + +  PD  GR+ IL +H+
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHT 332          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.376e-40
Identity = 82/152 (53.95%), Postives = 103/152 (67.76%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPGTGKTLLA+AVA E    F     SE V+ F+G GAS V+D+F+ AK KAP I+FIDEIDA+           + E ++T+ QLL EMDGF     V ++ ATNRPD+LD A+LRPGRFDR + V  PD  GR++IL +H+R
Sbjct:  204 PKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTR 355          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.292e-40
Identity = 81/151 (53.64%), Postives = 102/151 (67.55%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHS 475
            PKG LL GPPGTGKTLLA+AVA E    F     SE V+ F+G GA  VRD+F+ AK K+PCI+FIDEIDAV           + E ++T+ QLL EMDGF     V ++AATNRPD+LD A+LRPGRFDR + +  PD  GR++I  +H+
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHT 332          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.292e-40
Identity = 85/156 (54.49%), Postives = 104/156 (66.67%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRGKAL 490
            PKG LL GPPGTGKTLLA+AVA E    F    ASEFV  ++G GA  VR +FE AK K+P I+FIDEIDAV           + E ++T+ QLL E+DGF     V ++AATNRPD+LD ALLRPGRFDR + V  P+  GR +IL +H+ G AL
Sbjct:  185 PKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMAL 340          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.627e-39
Identity = 82/152 (53.95%), Postives = 101/152 (66.45%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPGTGKTLLA+AVA  A   F   AA E V+ F+G GA  VR+LFE A+ KAP I+FIDEIDA+           + E ++T+ QLL EMDGF     + V+AATNR D+LD ALLRPGRFDR + +  PD  GR +I  +H+R
Sbjct:  213 PKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTR 364          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.430e-39
Identity = 82/153 (53.59%), Postives = 101/153 (66.01%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSRG 481
            PKG LL GPPGTGKTLLARAVA +    F     SE V+ ++G GA  VR+LFE AK K+P I+FIDEIDA+           + E  +T+ QLL EMDGFS    V ++ ATNR D+LD ALLRPGRFDR + +  PD+ GRV IL++H  G
Sbjct:  187 PKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAG 339          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
YME1_SCHPO4.787e-4153.99Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
PSMR_METMP1.393e-4054.30Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM71.393e-4054.30Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM62.376e-4054.30Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM52.376e-4054.30Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METJA2.376e-4053.95Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_METVS5.292e-4053.64Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METTH5.292e-4054.49Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METKA2.627e-3953.95Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_METPE3.430e-3953.59Proteasome-activating nucleotidase OS=Methanosphae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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