FC925412

Overview
NameFC925412
Unique NameFC925412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1991 contig Ccv1_Contig1991:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.480e-39
Identity = 83/152 (54.61%), Postives = 97/152 (63.82%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPG GKTL+A+AVA      F     SE V  F+G GA  V +LFE AK KAP I+FIDEIDA+             E  +T+ QLL EMDGF     V V+AATNRPD+LD ALLRPGRFDR + V  PD  GR++IL VH+R
Sbjct:  172 PKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTR 323          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.851e-39
Identity = 83/152 (54.61%), Postives = 97/152 (63.82%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPG GKTL+A+AVA      F     SE V  F+G GA  V +LFE AK KAP I+FIDEIDA+             E  +T+ QLL EMDGF     V V+AATNRPD+LD ALLRPGRFDR + V  PD  GR++IL VH+R
Sbjct:  172 PKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTR 323          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.642e-39
Identity = 82/152 (53.95%), Postives = 98/152 (64.47%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPG GKTL+A+A+A E    F     SE V  ++G GA  V +LFE AK KAP I+FIDEIDA+             E  +T+ QLL EMDGF     V V+AATNRPD+LD ALLRPGRFDR + V  PD  GR++IL VH+R
Sbjct:  171 PKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTR 322          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.304e-38
Identity = 82/152 (53.95%), Postives = 98/152 (64.47%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPG GKTL+A+A+A E    F     SE V  ++G GA  V +LFE AK KAP I+FIDEIDA+             E  +T+ QLL EMDGF     V V+AATNRPD+LD ALLRPGRFDR + V  PD  GR++IL VH+R
Sbjct:  174 PKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTR 325          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.304e-38
Identity = 82/152 (53.95%), Postives = 98/152 (64.47%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPG GKTL+A+A+A E    F     SE V  ++G GA  V +LFE AK KAP I+FIDEIDA+             E  +T+ QLL EMDGF     V V+AATNRPD+LD ALLRPGRFDR + V  PD  GR++IL VH+R
Sbjct:  174 PKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTR 325          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.904e-38
Identity = 80/152 (52.63%), Postives = 99/152 (65.13%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPGTGKTLLA+AVA      F     SE V+ ++G GA  VR+LFE AK K+P I+FIDEID++           + E ++T+ QLL EMDGF     V +LAATNRPD+LD ALLRPGRFDR + V  P    R +IL +H+R
Sbjct:  193 PKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDILDPALLRPGRFDRMIKVPMPTAEAREQILKIHAR 344          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.953e-38
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVHSR 478
            PKG LL GPPGTGKTLLARAVA +    F     SE V+ ++G GA  VR+LF+ AK +AP I+FIDEIDA+           + E ++T+ QLL EMDGF     V ++AATNR D+LD ALLRPGRFDR + +  PD  GR+ IL +H++
Sbjct:  187 PKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQ 338          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.469e-38
Identity = 81/150 (54.00%), Postives = 101/150 (67.33%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            PKG LL GPPGTGKT+LA+AVA E+   F    ASEF + FVG GA  VR+LFE AK KAP I+FIDEIDA+             E ++T+ QLL E+DGF+    V ++AATNR D+LD ALLRPGRFDR + V  PD  GR +I +++
Sbjct:  168 PKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIY 317          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.469e-38
Identity = 81/150 (54.00%), Postives = 101/150 (67.33%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            PKG LL GPPGTGKT+LA+AVA E+   F    ASEF + FVG GA  VR+LFE AK KAP I+FIDEIDA+             E ++T+ QLL E+DGF+    V ++AATNR D+LD ALLRPGRFDR + V  PD  GR +I +++
Sbjct:  168 PKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIY 317          
BLAST of FC925412 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.469e-38
Identity = 81/150 (54.00%), Postives = 101/150 (67.33%), Query Frame = 2
Query:   23 PKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILHVH 472
            PKG LL GPPGTGKT+LA+AVA E+   F    ASEF + FVG GA  VR+LFE AK KAP I+FIDEIDA+             E ++T+ QLL E+DGF+    V ++AATNR D+LD ALLRPGRFDR + V  PD  GR +I +++
Sbjct:  168 PKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIY 317          
The following BLAST results are available for this feature:
BLAST of FC925412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
PSMR_THEGJ4.480e-3954.61Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_PYRKO5.851e-3954.61Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_PYRFU7.642e-3953.95Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_PYRHO1.304e-3853.95Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRAB1.304e-3853.95Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_UNCMA2.904e-3852.63Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METMJ4.953e-3851.97Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_SULIY6.469e-3854.00Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN6.469e-3854.00Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM6.469e-3854.00Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YH23FM1 TF Citrus clementina cDNA clone KN0AAP3YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925412 ID=FC925412; Name=FC925412; organism=Citrus clementina; type=EST; length=491bp
CACAGCTTTGCCCTCTAAGATTCCAAAAGGGTGTTTATTAGTTGGGCCAC
CAGGAACTGGGAAAACTTTATTGGCTAGGGCAGTTGCTGGAGAAGCCGGC
GTGCCATTTTTCTCATGTGCTGCCTCAGAGTTTGTTGAGTTGTTTGTTGG
TGTTGGCGCATCCAGAGTGAGGGATTTGTTTGAGAAGGCCAAATCGAAGG
CACCGTGTATTGTGTTTATTGATGAAATTGATGCTGTGGGGAGACAGAGA
GGAGCAGGGCTTGGAGGAGGAAACGATGAAAGAGAGCAGACTATTAATCA
GCTTTTGACTGAAATGGATGGCTTTTCTGGTAATTCTGGTGTTATTGTAT
TGGCTGCTACTAATAGGCCGGATGTTCTTGATTCTGCTTTGTTGAGGCCT
GGGAGATTTGACAGGCAGGTTACAGTGGATAGGCCTGATGTTGCTGGTAG
GGTTAAAATTCTTCACGTGCACTCCAGAGGAAAGGCACTTG
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