FC925414

Overview
NameFC925414
Unique NameFC925414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1919 contig Ccv1_Contig1919:35..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC_SCHPO (Cytochrome c OS=Schizosaccharomyces pombe GN=cyc1 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 9.325e-34
Identity = 61/104 (58.65%), Postives = 82/104 (78.85%), Query Frame = 3
Query:   75 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            PG+ K G  +FKT+CAQCHTVEKG  +K GPNL+G+FGR++G   G+SY+ AN++  + W+E+TL+ YL NPKKYIPGTKM F G KKP DR ++I YLK++T+
Sbjct:    5 PGDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWDEETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKATS 108          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC_DEBOC (Cytochrome c OS=Debaryomyces occidentalis GN=CYC1 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.218e-33
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            G+ K    +FKT+C QCHTVEKG  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ DYL NPKKYIPGTKM F GLKKP+DR DLI YL  +T
Sbjct:    8 GSEKKDANLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRKSGQAAGYSYTDANKKKGVEWTEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLITYLANAT 109          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC_ATESP (Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.218e-33
Identity = 63/102 (61.76%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            G+ + G++IF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKRIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQASGFTYTEANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC_THEAN (Cytochrome c OS=Theileria annulata GN=TA12950 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.591e-33
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 3
Query:   72 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            P G+   G K+FK+KCAQCHT+ KG   KQGPNL G +GR+SG+T  Y+YS ANKN  + W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLK++++
Sbjct:   11 PEGDPAKGAKLFKSKCAQCHTINKGGSVKQGPNLFGFYGRKSGSTD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC2_DROME (Cytochrome c-2 OS=Drosophila melanogaster GN=Cyt-c-p PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.591e-33
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   72 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            P G+ + G+K+F  +CAQCHTVE G  HK GPNL+GL GR++G   G++Y+ ANK   + W E TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC2_CERCA (Cytochrome c-2 OS=Ceratitis capitata PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.591e-33
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 3
Query:   72 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            P G+ + G+K+F  +CAQCHTVE G  HK GPNL+GL GR++G   G++Y+ ANK   + W E TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC1B_XENLA (Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-B PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.591e-33
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            G+A  G+KIF  KCAQCHTVEK   HK GPNL GLFGR++G  PG+SY+ ANK+  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDAGKGKKIFIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEETLLEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC_THEPA (Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.077e-33
Identity = 65/105 (61.90%), Postives = 83/105 (79.05%), Query Frame = 3
Query:   72 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            P G++  G K+FK+KCAQCHT+ KG   KQGPNL G +GR+SG +  Y+YS ANKN  + W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLK++++
Sbjct:   11 PEGDSSKGAKLFKSKCAQCHTINKGGSVKQGPNLYGFYGRKSGASD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC_LAMTR (Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.077e-33
Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            G+ + G+K+F  KC+QCHTVEK   HK GPNL+GLFGR++G  PG+SY+ ANK+  + W ++TL+ YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:    2 GDVEKGKKVFVQKCSQCHTVEKAGKHKTGPNLSGLFGRKTGQAPGFSYTDANKSKGIVWNQETLFVYLENPKKYIPGTKMIFAGIKKEGERKDLIAYLKKSTS 104          
BLAST of FC925414 vs. ExPASy Swiss-Prot
Match: CYC_HANAN (Cytochrome c OS=Hansenula anomala PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.077e-33
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            G+ K G  +FKT+C QCHTVEKG  HK GPNL+G+FGRQSG   GYSY+ AN   AV W E+T+ DYL NPKKYIPGTKM F GLKK +DR DL+ YL  +T
Sbjct:    7 GSEKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRQSGKAEGYSYTDANIKKAVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKEKDRNDLVTYLANAT 108          
The following BLAST results are available for this feature:
BLAST of FC925414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_SCHPO9.325e-3458.65Cytochrome c OS=Schizosaccharomyces pombe GN=cyc1 ... [more]
CYC_DEBOC1.218e-3363.73Cytochrome c OS=Debaryomyces occidentalis GN=CYC1 ... [more]
CYC_ATESP1.218e-3361.76Cytochrome c OS=Ateles sp. GN=CYCS PE=1 SV=3[more]
CYC_THEAN1.591e-3362.86Cytochrome c OS=Theileria annulata GN=TA12950 PE=3... [more]
CYC2_DROME1.591e-3359.62Cytochrome c-2 OS=Drosophila melanogaster GN=Cyt-c... [more]
CYC2_CERCA1.591e-3359.62Cytochrome c-2 OS=Ceratitis capitata PE=1 SV=2[more]
CYC1B_XENLA1.591e-3364.08Cytochrome c, somatic B OS=Xenopus laevis GN=cycs-... [more]
CYC_THEPA2.077e-3361.90Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 ... [more]
CYC_LAMTR2.077e-3360.19Cytochrome c OS=Lampetra tridentata GN=cyc PE=1 SV... [more]
CYC_HANAN2.077e-3363.73Cytochrome c OS=Hansenula anomala PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ02FM1 TF Citrus clementina cDNA clone KN0AAP8YJ02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925414 ID=FC925414; Name=FC925414; organism=Citrus clementina; type=EST; length=614bp
CTCTCTCTGCGTCTTCTTTCTCTCTTTGGATCTTTCAAAACACCACAATA
ATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAAGGCCGGAGAGAA
GATCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGAGAAAGGCGCCG
GTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGGAAGGCAATCGGGG
ACTACACCTGGGTACTCATACTCTGCGGCTAACAAGAACATGGCTGTGAA
TTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAACCCTAAGAAGTACA
TTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCTGACCTTATTGCATATTTGAAACAATCTACTGCATAAGAACTTGCCGA
TAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGT
GCGGATATAGTACTGTTTTTTACCAATAAATTTTAAACATTTAAGGTTCA
GCAATGTTCTTTGTAACTTGACCATTGCTAATTTGAGAAAAGGTTGCTGT
CATTGGCAAACATAATATTCAATTGAATTTCCTGGTTATAATCAAAAAAA
AAAAAAAAAAAAAA
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