FC925416

Overview
NameFC925416
Unique NameFC925416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 257
            Y G+R R WGKWVAEIREP + +++WLG++++   AA AYD A   + G SARLN P L
Sbjct:   67 YTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLPLL 125          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 251
            ++G+R R WG WV+EIR P  ++RIWLG++ T   AARAYD A   + GP AR NFP
Sbjct:    8 FRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP 64          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE1F_ARATH (Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 254
            Y+GIR R   KWV E+REP  + RIWLG+Y T   AARA+D AV  LRG SA LNF +
Sbjct:   30 YRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGRSACLNFAD 87          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 260
            Y+G+R R WGK+ AEIR+P K  +R+WLG+Y T   AA AYD A + +RG  A LNFP  I
Sbjct:   99 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRI 159          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 260
            Y+G+R R WGK+ AEIR+P K  +R+WLG+Y T   AA AYD A + +RG  A LNFP  I
Sbjct:  103 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRI 163          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 260
            Y+G+R R WGK+ AEIR+P K  +R+WLG+Y T   AA AYD A + +RG  A LNFP  I
Sbjct:  105 YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRI 165          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE1E_ARATH (Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana GN=DREB1E PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATE 320
            Y+G+R R   KWV E+REP  + R+WLG+Y T   AARA+D AV  LRG SA LNF +  ++          +IR+ A E
Sbjct:   30 YRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAARAHDVAVLALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAE 109          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI--FQEDDLRDVSAASIRKKATEVGA 329
            Y+G+R R WGK+ AEIR+P K  +R+WLG++ T   AA AYD A F +RG  A LNFP  +   + D +R  S  S    + E GA
Sbjct:  148 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGA 233          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDD 275
            ++G+R R WGK+ AEIR+P++  +R+WLG++ T   AARAYD A F LRG  A LNFP   +   D
Sbjct:   20 FRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNEYYPRMD 85          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE1G_ORYSJ (Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. japonica GN=DREB1G PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNF---------PELIFQEDDLRDV---SAASIRKKATEVGAKVDALQAA 353
            +KG+R R  G+WV E+REP+ + RIWLG++ T   AARA+D A   LRG +A LNF         P +    DD+R     +A + R    E  A  +   AA
Sbjct:   55 FKGVRRRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAALALRGRAACLNFADSPRRLRVPPIGASHDDIRRAAAEAAEAFRPPPDESNAATEVAAAA 157          
The following BLAST results are available for this feature:
BLAST of FC925416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
DRE2H_ARATH3.315e-1254.24Putative dehydration-responsive element-binding pr... [more]
ERF03_ARATH4.329e-1254.39Ethylene-responsive transcription factor ERF003 OS... [more]
DRE1F_ARATH7.385e-1258.62Dehydration-responsive element-binding protein 1F ... [more]
ERF2_TOBAC9.645e-1254.10Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY9.645e-1254.10Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF1_TOBAC9.645e-1254.10Ethylene-responsive transcription factor 1 OS=Nico... [more]
DRE1E_ARATH9.645e-1245.00Dehydration-responsive element-binding protein 1E ... [more]
EF100_ARATH1.645e-1145.35Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF98_ARATH2.149e-1150.00Ethylene-responsive transcription factor ERF098 OS... [more]
DRE1G_ORYSJ2.806e-1138.83Dehydration-responsive element-binding protein 1G ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ03FM1 TF Citrus clementina cDNA clone KN0AAP8YJ03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925416 ID=FC925416; Name=FC925416; organism=Citrus clementina; type=EST; length=691bp
GCACTTCGACTTCTTCGAAAAGCCCAGAGAAGCGGAAGCCAAGGCAGCAG
CGGCAACACCAACAGCAGCAGGAAAAGCCGTACAAGGGGATAAGGATGAG
GAAGTGGGGGAAGTGGGTCGCTGAAATTAGAGAGCCTAACAAGAGATCCA
GAATCTGGCTTGGTTCTTACACCACGCCTATAGCCGCCGCACGTGCCTAC
GACACGGCCGTCTTCTATCTCCGGGGCCCTTCCGCTCGTCTTAACTTCCC
CGAATTGATTTTCCAAGAAGACGATCTTCGAGACGTTTCTGCCGCTTCAA
TACGCAAGAAAGCTACCGAAGTTGGCGCTAAGGTCGACGCTTTACAAGCT
GCTCTCCATGCTGCTAATTCAGAATCTGAATCCAATTCCAATTCCAATTT
CAATTCTATTCGATTGTCCGAGAAGCCTGATTTAAACAAGTTTCCAGAGA
GTTCTGATGAAGATTGATAACACAAAATACTTGCAAGCTCACAATTACCT
ACCCTAGCCTTTCCACGATTACGTACTGTTTTATTCCCATCATCAGTTTC
AACTTTGAAAACGTACGGAATCACAAGGATTCTGTTTCATATATTTATAT
TATATATAGGTCGATCTTCTTAAATTAGTATGTAACACGTACGACTGTTA
TTTATTTTAGTTGATTAATTAAAAAAAAAAAAAAAAAAAAA
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