FC925416

Overview
NameFC925416
Unique NameFC925416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10367 contig Ccv1_Contig10367:180..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATE 320
            Y+G+R R  GKWV E+REPNK++RIWLG++ T   AARA+D A   LRG SA LNF +  ++        A  I+K A E
Sbjct:   51 YRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAE 130          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 251
            ++G+R R WGKW AEIR+P++R R+WLG++ T   AA  YD A   LRGP+A LNFP
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 254
            Y+G+R R WGKW AEIR+P K +R+WLG++    +AARAYD A    RG  A+LNFPE
Sbjct:  185 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPE 242          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLN 245
            Y+G+R R WGKWVAEIREP KR+R WLG++ T   AARAYD A  YL G  A+LN
Sbjct:   55 YRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLN 109          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 251
            Y+G+R R WG++ AEIR+P K+SR+WLG++ T   AA+AYDTA    RGP A+ NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 251
            Y+G+R R WG++ AEIR+P K+SR+WLG++ T   AA+AYDTA    RGP A+ NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF25_ARATH (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKAT 317
            ++GIR+R  GKWV+EIREP K +RIWLG+Y  P  AA AYD A   L+GP A LNFP L          SAA IR  A+
Sbjct:   65 FRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNFPGLALTYVAPVSNSAADIRAAAS 142          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 260
            Y+G+R R WGKW AEIR+P K +R+WLG++ T   AA AYD A    +G  A+LNFPE +
Sbjct:   39 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERV 98          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATE 320
            Y+G+R R  GKWV E+REPNK+SRIWLG++ T   AARA+D A   LRG SA LNF +  ++           I+K A+E
Sbjct:   54 YRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASE 133          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEVGAKVDALQAAL 356
            Y+GIR R  GKWV+EIREP K +R+WLG+Y TP  AA AYD A   L+G    LNFP+ +         SAA IR  A    A   A  AA+
Sbjct:   90 YRGIRCRS-GKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPDSLGSYPIPLSSSAAHIRCAAAAAAATRGAAGAAV 180          
The following BLAST results are available for this feature:
BLAST of FC925416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
DRE1A_ARATH3.542e-1448.75Dehydration-responsive element-binding protein 1A ... [more]
CRF1_ARATH3.542e-1456.14Ethylene-responsive transcription factor CRF1 OS=A... [more]
ABR1_ARATH3.542e-1456.90Ethylene-responsive transcription factor ABR1 OS=A... [more]
ABI4_ARATH3.542e-1463.64Ethylene-responsive transcription factor ABI4 OS=A... [more]
ERF4_TOBAC6.041e-1456.14Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY6.041e-1456.14Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF25_ARATH6.041e-1453.16Ethylene-responsive transcription factor ERF025 OS... [more]
EF113_ARATH6.041e-1453.33Ethylene-responsive transcription factor ERF113 OS... [more]
DRE1D_ARATH6.041e-1448.75Dehydration-responsive element-binding protein 1D ... [more]
ERF26_ARATH7.890e-1447.83Ethylene-responsive transcription factor ERF026 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ03FM1 TF Citrus clementina cDNA clone KN0AAP8YJ03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925416 ID=FC925416; Name=FC925416; organism=Citrus clementina; type=EST; length=691bp
GCACTTCGACTTCTTCGAAAAGCCCAGAGAAGCGGAAGCCAAGGCAGCAG
CGGCAACACCAACAGCAGCAGGAAAAGCCGTACAAGGGGATAAGGATGAG
GAAGTGGGGGAAGTGGGTCGCTGAAATTAGAGAGCCTAACAAGAGATCCA
GAATCTGGCTTGGTTCTTACACCACGCCTATAGCCGCCGCACGTGCCTAC
GACACGGCCGTCTTCTATCTCCGGGGCCCTTCCGCTCGTCTTAACTTCCC
CGAATTGATTTTCCAAGAAGACGATCTTCGAGACGTTTCTGCCGCTTCAA
TACGCAAGAAAGCTACCGAAGTTGGCGCTAAGGTCGACGCTTTACAAGCT
GCTCTCCATGCTGCTAATTCAGAATCTGAATCCAATTCCAATTCCAATTT
CAATTCTATTCGATTGTCCGAGAAGCCTGATTTAAACAAGTTTCCAGAGA
GTTCTGATGAAGATTGATAACACAAAATACTTGCAAGCTCACAATTACCT
ACCCTAGCCTTTCCACGATTACGTACTGTTTTATTCCCATCATCAGTTTC
AACTTTGAAAACGTACGGAATCACAAGGATTCTGTTTCATATATTTATAT
TATATATAGGTCGATCTTCTTAAATTAGTATGTAACACGTACGACTGTTA
TTTATTTTAGTTGATTAATTAAAAAAAAAAAAAAAAAAAAA
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