FC925416

Overview
NameFC925416
Unique NameFC925416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10367 contig Ccv1_Contig10367:180..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE2B_ARATH (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana GN=DREB2B PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQE 269
            ++G+R R WGKWVAEIREP   +R+WLG++ T   AA AYD A   + G  ARLNFP+ +  E
Sbjct:   78 FRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNFPQSVGSE 140          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE1C_ORYSJ (Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. japonica GN=DREB1C PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 3
Query:   81 YKGIRMR-KWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNF----------PELIFQEDDLR------------DVSAASIRKKATEVGAKVDALQAAL 356
            Y+G+R R   G+WV E+REPNK+SRIWLG++ T  AAARA+D A   LRG  A LNF          P  +   DD+R            D +AA+    A  V A   A  A +
Sbjct:   34 YRGVRRRGPAGRWVCEVREPNKKSRIWLGTFATAEAAARAHDVAALALRGRGACLNFADSARLLRVDPATLATPDDIRRAAIELAESCPHDAAAAAASSSAAAVEASAAAAPAMM 148          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE1C_ORYSI (Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. indica GN=DREB1C PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 3
Query:   81 YKGIRMR-KWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNF----------PELIFQEDDLR------------DVSAASIRKKATEVGAKVDALQAAL 356
            Y+G+R R   G+WV E+REPNK+SRIWLG++ T  AAARA+D A   LRG  A LNF          P  +   DD+R            D +AA+    A  V A   A  A +
Sbjct:   34 YRGVRRRGPAGRWVCEVREPNKKSRIWLGTFATAEAAARAHDVAALALRGRGACLNFADSARLLRVDPATLATPDDIRRAAIELAESCPHDAAAAAASSSAAAVEASAAAAPAMM 148          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 251
            ++G+R R WG++ AEIR+P K++R+WLG++ +   AARAYD+A   LRGP A+ NFP
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 251
            Y+G+R R WG++ AEIR+P K+ R+WLGS+ T   AARAYD+A    RG  A  NFP
Sbjct:   53 YRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: DRE2E_ARATH (Dehydration-responsive element-binding protein 2E OS=Arabidopsis thaliana GN=DREB2E PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREP--------NKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 254
            ++G+R R WGKWVAEIREP        ++  R+WLG++ T   AA AYD A   + GP ARLNFPE
Sbjct:   70 FRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMYGPYARLNFPE 135          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNF 248
            ++G+R R WGKW AEIR+P +R RIWLG++ T   AA  YD A   LRGP A  NF
Sbjct:  125 FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP----ELIFQEDDLRDVSAASIRKKATEVGAKVDALQAAL 356
            ++G+R R WG WVAEIR P  + RIWLG++ T   AARAYD A   + G +A+ NFP          +   D+SA+S    +T   +    L A L
Sbjct:    7 FRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKL 102          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAA 296
            ++G+R R+WG WV+EIR P  + R+WLG++ T   AARAYD A   + G SA+ NFP +     +  ++++A
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPVIKSNGSNSLEINSA 78          
BLAST of FC925416 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   81 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 251
            ++G+R R WG++ AEIR+P K++R+WLG++ +   AARAYD A   LRGP A+ NFP
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
The following BLAST results are available for this feature:
BLAST of FC925416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
DRE2B_ARATH1.488e-1252.38Dehydration-responsive element-binding protein 2B ... [more]
DRE1C_ORYSJ1.488e-1240.00Dehydration-responsive element-binding protein 1C ... [more]
DRE1C_ORYSI1.488e-1240.00Dehydration-responsive element-binding protein 1C ... [more]
ERF82_ARATH1.943e-1252.63Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF77_ARATH1.943e-1254.39Ethylene-responsive transcription factor 10 OS=Ara... [more]
DRE2E_ARATH1.943e-1251.52Dehydration-responsive element-binding protein 2E ... [more]
CRF3_ARATH2.538e-1255.36Ethylene-responsive transcription factor CRF3 OS=A... [more]
WIN1_ARATH3.315e-1239.58Ethylene-responsive transcription factor WIN1 OS=A... [more]
SHN3_ARATH3.315e-1241.67Ethylene-responsive transcription factor SHINE 3 O... [more]
ERF3_TOBAC3.315e-1252.63Ethylene-responsive transcription factor 3 OS=Nico... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YJ03FM1 TF Citrus clementina cDNA clone KN0AAP8YJ03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925416 ID=FC925416; Name=FC925416; organism=Citrus clementina; type=EST; length=691bp
GCACTTCGACTTCTTCGAAAAGCCCAGAGAAGCGGAAGCCAAGGCAGCAG
CGGCAACACCAACAGCAGCAGGAAAAGCCGTACAAGGGGATAAGGATGAG
GAAGTGGGGGAAGTGGGTCGCTGAAATTAGAGAGCCTAACAAGAGATCCA
GAATCTGGCTTGGTTCTTACACCACGCCTATAGCCGCCGCACGTGCCTAC
GACACGGCCGTCTTCTATCTCCGGGGCCCTTCCGCTCGTCTTAACTTCCC
CGAATTGATTTTCCAAGAAGACGATCTTCGAGACGTTTCTGCCGCTTCAA
TACGCAAGAAAGCTACCGAAGTTGGCGCTAAGGTCGACGCTTTACAAGCT
GCTCTCCATGCTGCTAATTCAGAATCTGAATCCAATTCCAATTCCAATTT
CAATTCTATTCGATTGTCCGAGAAGCCTGATTTAAACAAGTTTCCAGAGA
GTTCTGATGAAGATTGATAACACAAAATACTTGCAAGCTCACAATTACCT
ACCCTAGCCTTTCCACGATTACGTACTGTTTTATTCCCATCATCAGTTTC
AACTTTGAAAACGTACGGAATCACAAGGATTCTGTTTCATATATTTATAT
TATATATAGGTCGATCTTCTTAAATTAGTATGTAACACGTACGACTGTTA
TTTATTTTAGTTGATTAATTAAAAAAAAAAAAAAAAAAAAA
back to top