FC925425

Overview
NameFC925425
Unique NameFC925425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.961e-52
Identity = 101/174 (58.05%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   V L +  + +  +L     PLV +MK+EK P  TY  IGGLD QI+EIKE +ELP+  PE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A EH PSI+F+DEID+ G+ R  S S  G+ E+QRTMLELLNQL+G
Sbjct:  146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNS-GGEREIQRTMLELLNQLDG 318          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 9.092e-52
Identity = 99/174 (56.90%), Postives = 132/174 (75.86%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   V L + ++ +  +L     P+V++MK+EK P  TY  +GGLDQQI+EIKE +ELP+  PE +E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+R+ GSEL+QKY+G+G +MVRELF +A E+APSI+F+DEID+ G+ R  S S  G+ E+QRTMLELLNQL+G
Sbjct:  149 PGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNS-GGEREIQRTMLELLNQLDG 321          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.187e-51
Identity = 104/190 (54.74%), Postives = 132/190 (69.47%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            K+VV               RV +  + Y +H+ LP K+ P V +M+VE+ PD TY  +GG  +QI++++EV+E P+  PE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FI V GSELVQKY+GEG+RMVRELF MAR     +IF DEID+ G AR   G+  GD+EVQRTMLEL+NQL+G
Sbjct:  120 KFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA-GGDNEVQRTMLELINQLDG 308          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 104/190 (54.74%), Postives = 131/190 (68.95%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            K+VV               RV +  + Y + + LP K+ P V +M VE+ PD TY+ +GG  +QI++++EV+ELP+  PE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+ G AR   G   GD+EVQRTMLE++NQL+G
Sbjct:  113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDG 301          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 104/190 (54.74%), Postives = 131/190 (68.95%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            K+VV               RV +  + Y + + LP K+ P V +M VE+ PD TY+ +GG  +QI++++EV+ELP+  PE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+ G AR   G   GD+EVQRTMLE++NQL+G
Sbjct:  112 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDG 300          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 104/190 (54.74%), Postives = 131/190 (68.95%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            K+VV               RV +  + Y + + LP K+ P V +M VE+ PD TY+ +GG  +QI++++EV+ELP+  PE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+ G AR   G   GD+EVQRTMLE++NQL+G
Sbjct:  113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDG 301          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.645e-51
Identity = 104/190 (54.74%), Postives = 131/190 (68.95%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            K+VV               RV +  + Y + + LP K+ P V +M VE+ PD TY+ +GG  +QI++++EV+ELP+  PE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIRV GSELVQKY+GEG+RMVRELF MAR     I+F DE+D+ G AR   G   GD+EVQRTMLE++NQL+G
Sbjct:  113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDG 301          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.005e-50
Identity = 101/190 (53.16%), Postives = 132/190 (69.47%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            K+VV               RV +  + Y + + LP K+   V +M+VE+ PD TY  +GG  +QI++++EV+E+P+  PE F +LGI  PKGVL+YGPPGTGKTL ARAVA+ TD  F+RV GSELVQKY+GEG+RMVR+LF MAR     IIF DE+D+ G AR   G+  GD+EVQRTMLEL+NQL+G
Sbjct:  115 KFVVALGDKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGA-GGDNEVQRTMLELINQLDG 303          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.715e-50
Identity = 103/190 (54.21%), Postives = 136/190 (71.58%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            K+VV            P  RVAL   +  +  +LP+   P+V   +VE+ P+ +Y+ IGGLD QI+EI+E +ELP+  PELF  +GI  PKGVLLYGPPGTGKTLLA+AVA+ T  TFIRV GSE VQKYIGEG+R+VRE+F +A+E APSIIF+DE+D+  +AR  +   +GD EVQRTM++LL +L+G
Sbjct:   86 KFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAI-AARRTNSDTSGDREVQRTMMQLLAELDG 274          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.715e-50
Identity = 99/170 (58.24%), Postives = 131/170 (77.06%), Query Frame = 1
Query:   76 VALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            V L N +  +  ++  +V P+VN+MKVEK P  +Y  IGGL+ Q++E+KE IELP+  PEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A E APSI+F+DEID+ G+ R  S S  G+ E+QRTMLELLNQL+G
Sbjct:  149 VLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQS-GGEREIQRTMLELLNQLDG 317          
The following BLAST results are available for this feature:
BLAST of FC925425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PRS4_CHICK6.961e-5258.0526S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_CAEEL9.092e-5256.90Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS7_RAT1.187e-5154.7426S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_SPIOL2.645e-5154.7426S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_PRUPE2.645e-5154.7426S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_ORYSJ2.645e-5154.7426S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7A_ARATH2.645e-5154.7426S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS7_DICDI1.005e-5053.1626S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR_ARCFU1.715e-5054.21Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS4_DICDI1.715e-5058.2426S protease regulatory subunit 4 homolog OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 TF Citrus clementina cDNA clone KN0AAP11YE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925425 ID=FC925425; Name=FC925425; organism=Citrus clementina; type=EST; length=587bp
GTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATAT
AACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATG
TTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTATG
AAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGA
TCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCTC
CCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTA
TATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTCA
TCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAGA
AATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCA
AGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCGG
ATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAGA
GGACTATGCTGGAGCTGCTCAACCAGCTTGAAGGATT
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