FC925425

Overview
NameFC925425
Unique NameFC925425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14129 contig Ccv1_Contig14129:386..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.925e-50
Identity = 104/190 (54.74%), Postives = 134/190 (70.53%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            K+VV            P  +VAL   S  +  +LP+   P V  M+V   P+  Y  IGGL+ QI E+KE +ELP+  PELF+ +GI  PKGVLLYGPPGTGKTLLA+AVA+ T  TFIR+ GSELVQKYIGEG+RMVRELF +A+E +PSIIF+DEIDS G+ R+ S   +GD EVQRT+++LL +++G
Sbjct:  104 KFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGIEPPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKEKSPSIIFIDEIDSIGAKRLDS-ITSGDREVQRTLVQLLAEMDG 292          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.452e-49
Identity = 99/174 (56.90%), Postives = 131/174 (75.29%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   + + N    +  IL  +V P+V++MKVEK P  +Y  IGGLD QI+EIKE +ELP+  PEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A E +PSI+F+DEID+ G+ R  + S  G+ E+QRTMLELLNQL+G
Sbjct:  154 PGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHS-GGEREIQRTMLELLNQLDG 326          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.896e-49
Identity = 97/174 (55.75%), Postives = 132/174 (75.86%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P  R  L   S  +  +LP+     +  M++ + P+ TY+ IGGL+ QI+EI+E +ELP+  P+LFE +GI+ PKGVLLYGPPGTGKTLLARAVAH T+  F+RV GSELVQKYIGEG+R+VRELF +A++ APSIIF+DEID+ G+ R  S + +GD EVQRT+++LL +++G
Sbjct:  114 PGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDS-TTSGDREVQRTLMQLLAEMDG 286          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.476e-49
Identity = 105/190 (55.26%), Postives = 127/190 (66.84%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            KYVV               RV +    Y + + LP K+ P V +M VE+ PD+TY  IGG  +QI++I+EV+ELP+  PE F  LGI  PKGVL YGPPG+GKTL+ARAVA+ T   FIRV GSELVQKYIGEG+RMVRELF MAR     I+F DEID+ G AR   G    D+EVQRTMLE+L QL+G
Sbjct:  150 KYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGV-GSDNEVQRTMLEILYQLDG 338          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.234e-49
Identity = 96/158 (60.76%), Postives = 125/158 (79.11%), Query Frame = 1
Query:  112 ILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            +L  ++ P+VN+MK+EK P  TY  IGGL++QI+EIKE +ELP+  PEL++ +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV G+EL+Q+Y+GEG ++VRELF +A  HAPSIIF+DEID+ G  R  + S  G  EVQRTMLELLNQL+G
Sbjct:  146 VLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVADMHAPSIIFIDEIDAIGGKRYNTSS-GGRREVQRTMLELLNQLDG 302          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.516e-49
Identity = 95/174 (54.60%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   V L + +  +  +L     P++N+MK++K P  +Y  IGGL+ QI+EIKE +ELP+  PEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G R+VR+LF  A EH+PSI+F+DEID+ G+ R  + S   + E+QRTMLELLNQL+G
Sbjct:  152 PGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQS-GAEREIQRTMLELLNQLDG 324          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.516e-49
Identity = 97/174 (55.75%), Postives = 131/174 (75.29%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   + + N    +  IL  +V P+V++MKVEK P  +Y  IGGL+ QI+EIKE +ELP+  PEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A + +PSI+F+DEID+ G+ R  + S  G+ E+QRTMLELLNQL+G
Sbjct:  149 PGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANS-GGEREIQRTMLELLNQLDG 321          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.204e-49
Identity = 101/174 (58.05%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   VAL N    +  +LP +  PLV  M+VE+ P   +  +GGL++QI+EI E + LPIK P LF  LGI  PKGVLL+GPPGTGKTLLA+AVA  T+ TFIRV GSELV K+IGEG+R+VRE+F +ARE APSI+F+DEID+  S R+  G+ +GD EVQRTML+LL +L+G
Sbjct:  100 PGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGT-SGDREVQRTMLQLLAELDG 272          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.409e-49
Identity = 97/174 (55.75%), Postives = 131/174 (75.29%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   + + N    +  IL  +V P+V++MKVEK P  +Y  IGGL+ QI+EIKE +ELP+  PEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A + +PSI+F+DEID+ G+ R  + S  G+ E+QRTMLELLNQL+G
Sbjct:  149 PGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS-GGEREIQRTMLELLNQLDG 321          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.229e-48
Identity = 95/174 (54.60%), Postives = 130/174 (74.71%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P  R  L   S  +  ILP+     +  M+V + P   Y+ IGGL++QI EI+E +ELP+K PE+F  +GI  PKGVLL+GPPGTGKTLLARAVAH T+  F+RV GSELVQKYIGEG+R+VRELF +A++ +PSIIF+DEID+ G++R +S + +GD EV RT+++LL +++G
Sbjct:  114 PGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNT-SGDREVHRTLMQLLAEMDG 286          
The following BLAST results are available for this feature:
BLAST of FC925425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PSMR_UNCMA2.925e-5054.74Proteasome-activating nucleotidase OS=Uncultured m... [more]
PRS4_ORYSJ1.452e-4956.9026S protease regulatory subunit 4 homolog OS=Oryza... [more]
PSMR_METMJ1.896e-4955.75Proteasome-activating nucleotidase OS=Methanoculle... [more]
PRS7B_ARATH2.476e-4955.2626S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS4_ENCCU3.234e-4960.7626S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS4_SCHPO5.516e-4954.6026S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS4B_ARATH5.516e-4955.7526S proteasome regulatory subunit 4 homolog B OS=A... [more]
PSMR_AERPE7.204e-4958.05Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS4A_ARATH9.409e-4955.7526S proteasome regulatory subunit 4 homolog A OS=A... [more]
PSMR_METPE1.229e-4854.60Proteasome-activating nucleotidase OS=Methanosphae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 TF Citrus clementina cDNA clone KN0AAP11YE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925425 ID=FC925425; Name=FC925425; organism=Citrus clementina; type=EST; length=587bp
GTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATAT
AACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATG
TTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTATG
AAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGA
TCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCTC
CCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTA
TATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTCA
TCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAGA
AATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCA
AGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCGG
ATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAGA
GGACTATGCTGGAGCTGCTCAACCAGCTTGAAGGATT
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