FC925425

Overview
NameFC925425
Unique NameFC925425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 97/190 (51.05%), Postives = 134/190 (70.53%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            ++VV            P  RVAL   +  +  +LPS   P V   +V + P+ TY+ IGGL +Q++E++E IELP+K PELFE +GI  PKGVLLYGPPG GKTL+A+A+AH  + TFIRV GSELV+KYIGEG+R+V ELF +A+E AP+IIF+DEID+ G+ RM   +  G+ EV RT+++LL +++G
Sbjct:   85 RFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDE-TTGGEREVNRTLMQLLAEMDG 273          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.027e-47
Identity = 95/174 (54.60%), Postives = 127/174 (72.99%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P  R  L   S  +  +LPS     V  M++   P   Y  IGGL +QI E++E +ELP+K PELF  +GI  PKGVLLYGPPGTGKTLLA+AVAH T+  F+RV GSELVQKYIGEG+R+VRELF +A++ AP+IIF+DEID+ G++R ++ + +GD EVQRT+++LL  ++G
Sbjct:  139 PGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANT-SGDREVQRTLMQLLAGMDG 311          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.953e-47
Identity = 96/190 (50.53%), Postives = 135/190 (71.05%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            ++VV            P +RVAL   +  +  +LP++  P V   +V + P  TY  IGGL++Q+ E++E +ELP+K PELFE +GI  PKGVLLYGPPG GKTL+A+AVA+H + TFIRV GSELV+K+IGEG+R+V ELF MA+E AP+IIF+DEID+ G+ RM   +  G+ EV RT+++LL +++G
Sbjct:   83 RFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDE-TTGGEREVNRTLMQLLAEMDG 271          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.953e-47
Identity = 90/174 (51.72%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P   VAL      +  +LP K  P+V  M++ + P+ TY  IGGL++QI+E++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI V  SE  QK++GEG+R+VRELF MA+  APSIIF+DEID+ G+ R+  G+ +G+ E+QRT+++LL +L+G
Sbjct:   95 PGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDG 267          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.163e-47
Identity = 96/190 (50.53%), Postives = 135/190 (71.05%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            ++VV            P  RVAL   +  +  +LPS+  P V   +V + P  +Y+ IGGLD+Q++E++E IELP+K PELFE +GI  PKGVLLYGPPG GKTL+A+A+AH  + TFIRV GSELV+K+IGEG+R+V ELF +A+E AP+IIF+DEID+ G+ RM   +  G+ EV RT+++LL +++G
Sbjct:   84 RFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDE-TTGGEREVNRTLMQLLAEMDG 272          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.806e-47
Identity = 93/174 (53.45%), Postives = 126/174 (72.41%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P+T VAL   S  +  +LP +V   + +M   + P  TY  +GGLD Q +EIKE +ELP+   +L+  +GI  P+GVLLYGPPGTGKT+L +AVA+HT  TFIRV+GSE VQKY+GEG RMVR++F +ARE APSI+F+DE+DS  + R  + S + D EVQR ++ELLNQ++G
Sbjct:   95 PNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDA-STSADREVQRVLIELLNQMDG 267          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.502e-46
Identity = 92/174 (52.87%), Postives = 129/174 (74.14%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P  RV L   +  +  +LP +       M++E+ PD  +  IGGL+ QI++IKEV+ELP+K PELFE +GI  PKGVLLYGPPGTGKTLLA+AVA  T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID+  S R +S    GD EVQRT+++LL +++G
Sbjct:  109 PGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTES-LTGGDREVQRTLMQLLAEMDG 281          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.502e-46
Identity = 94/171 (54.97%), Postives = 125/171 (73.10%), Query Frame = 1
Query:   73 RVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            R  L   S  +  +LPS     V  M++   P  TY+ IGGL++QI EI+E +ELP+  P+LFE +GI  PKGVLLYGPPGTGKTLLA+AVAH T   F+   GSELVQKYIGEG+R+VRELF +A+E APSI+F+DEID+ G++R ++   +GD EVQRT+++LL  ++G
Sbjct:  117 RCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEA-MTSGDREVQRTLMQLLAAMDG 286          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 2.562e-46
Identity = 91/174 (52.30%), Postives = 128/174 (73.56%), Query Frame = 1
Query:   64 PSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            P+  V +  DSY++   LPS+    V  M+V++ P  TY  +GGLD+QI+E+ E I LP+K  + F+ +GI  PKG L+YGPPGTGKTLLARA A  T+ TF++++  +LVQ YIGEG+++VR+ F +A+E AP+IIF+DE+D+ G+ R  S  ++GD EVQRTMLELLNQL+G
Sbjct:  142 PNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS-EKSGDREVQRTMLELLNQLDG 314          
BLAST of FC925425 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.562e-46
Identity = 95/190 (50.00%), Postives = 127/190 (66.84%), Query Frame = 1
Query:   16 KYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVYPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKPPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSTGSARMQSGSRNGDSEVQRTMLELLNQLEG 585
            +YVV              TRV+L   +  +   LP +V PLV  M  E   + +Y  +GGL +QI+E++EV+ELP+  PELF+ +GI  PKG LL+GPPGTGKTLLARAVA   DC F++V  S +V KYIGE +RM+RE+F  AR+H P I+FMDEID+ G  R   G+ + D E+QRT++ELLNQL+G
Sbjct:   95 RYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDG 283          
The following BLAST results are available for this feature:
BLAST of FC925425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
PSMR_PYRAB3.027e-4751.05Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_METB63.027e-4754.60Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_THEGJ3.953e-4750.53Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_SULSO3.953e-4751.72Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_THEON5.163e-4750.53Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS6B_ENCCU8.806e-4753.4526S protease regulatory subunit 6B homolog OS=Ence... [more]
PSMR_METVS1.502e-4652.87Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METHJ1.502e-4654.97Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS6A_YEAST2.562e-4652.3026S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS10_CAEEL2.562e-4650.00Probable 26S protease regulatory subunit S10B OS=C... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE07FM1 TF Citrus clementina cDNA clone KN0AAP11YE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925425 ID=FC925425; Name=FC925425; organism=Citrus clementina; type=EST; length=587bp
GTTCATCCTGATTTTAAATATGTTGTTGATATTGATAAAAGTATTGATAT
AACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAATGACAGCTATG
TTCTTCATTTGATCCTGCCAAGCAAAGTATATCCCCTGGTCAACCTTATG
AAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTGGTGGCCTTGA
TCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCTATCAAACCTC
CCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGGTGTATTGCTA
TATGGACCACCTGGTACGGGCAAAACGCTGTTGGCTAGAGCTGTGGCTCA
TCATACTGATTGTACTTTCATCAGGGTTTCAGGTTCTGAATTAGTCCAGA
AATACATTGGAGAAGGCTCCAGAATGGTTAGAGAACTTTTTGTTATGGCA
AGGGAACATGCTCCGTCTATCATTTTTATGGATGAAATTGACAGTACCGG
ATCCGCCCGAATGCAATCTGGCAGCCGAAATGGTGACAGTGAGGTGCAGA
GGACTATGCTGGAGCTGCTCAACCAGCTTGAAGGATT
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