FC925427

Overview
NameFC925427
Unique NameFC925427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925427_ssr88 microsatellite FC925427_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12581 contig Ccv1_Contig12581:199..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_MICAN (Bifunctional purine biosynthesis protein purH OS=Microcystis aeruginosa (strain NIES-843) GN=purH PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  118 ALISLSDKKDLASLGIGL-QELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDD--QQFRRKLAWKAFQHVASYDSAVSEW 672
            ALIS++DK  +      L +E  + I+S+GGTA +L++ G+ V KV + T  PE+L GRVKTLHP IHGGILARRD +  +  +  + I  FDLVVVNLYPF   + +   +     IE IDIGGPAM+RA+AKN   + V+ + + Y   L  L+ N  +   +FR+K+A + F    +YD A++ +
Sbjct:    5 ALISVTDKTGIVDFARQLTEEFDFEIISSGGTAKTLQSAGIPVIKVGEYTGSPEILGGRVKTLHPRIHGGILARRDWQSDLAEMEANQIRPFDLVVVNLYPFEQTIANP-DVTTAQAIEQIDIGGPAMLRASAKNFAHLTVISNPKYYEQYLSQLRQNNGEISLEFRQKMAGETFALTNAYDGAIAAY 191          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_CYAP7 (Bifunctional purine biosynthesis protein purH OS=Cyanothece sp. (strain PCC 7424) GN=purH PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.151e-33
Identity = 83/187 (44.39%), Postives = 114/187 (60.96%), Query Frame = 1
Query:  121 LISLSDKKDLASLGIGL-QELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQ--FRRKLAWKAFQHVASYDSAVSEW 672
            L+S+SDK  L  L   L +E  + I+S+GGTA SL++ G+ V KV   T  PE+L GRVKTLHP IHGGILARRD    +  L  + I   DLVVVNLYPF ++  +   +     IE IDIGGPAM+RA AKN   + V+ + + Y   LE L+ +  +    FR+K+A + F    +YD A++ +
Sbjct:    6 LLSVSDKTGLIELARQLVEEFEFEIISSGGTAKSLQDAGIPVIKVGDYTGSPEILGGRVKTLHPRIHGGILARRDVPQDLKDLDANNIRPLDLVVVNLYPF-EQTIAKDNVTVAQAIEQIDIGGPAMLRATAKNFAHLTVLCNPKYYQPYLEELRQHNGETSLAFRQKMAGETFALTNAYDQAIASY 191          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_SYNY3 (Bifunctional purine biosynthesis protein purH OS=Synechocystis sp. (strain PCC 6803) GN=purH PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 83/187 (44.39%), Postives = 112/187 (59.89%), Query Frame = 1
Query:  118 ALISLSDKKDLASLGIGL-QELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQD-DQQFRRKLAWKAFQHVASYDSAVSEW 672
            AL+S+SDK  +  L   L  E  + ++S+GGTA +L+  GV VTKV   T  PE+L GRVKTLHP IHGGILARRD       L  + I   DLVVVNLYPF ++  +  G+   + +E IDIGGPAMIRA AKN     V+ +   Y A L+ L+   +     R++ A +AF    +YD A++ +
Sbjct:    5 ALLSVSDKSGIVELAQRLVNEFQFDLISSGGTAKTLKEAGVPVTKVSDYTGAPEILGGRVKTLHPRIHGGILARRDLPSDQADLEANDIRPLDLVVVNLYPF-EQTIAKPGVTVAEAVEQIDIGGPAMIRATAKNFAHTTVLTNPNQYEAYLQALQEQGEIPLALRQQFAGEAFALTNAYDQAIANY 190          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_BACTN (Bifunctional purine biosynthesis protein purH OS=Bacteroides thetaiotaomicron GN=purH PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.701e-32
Identity = 82/186 (44.09%), Postives = 110/186 (59.14%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFL--KGNQDDQQFRRKLAWKAFQHVASYDSAV 663
            K AL+S+  K+ L  +   L E G   +STGGT   +E+ G     VE LT +P +L GRVKTLHP I GGIL RRD +  +  + ++ I   DLV+V+LYPF  + T A G    D IE IDIGG ++IRAAAKN+ DV++V     Y  LL+ L   G     + RR +A +AF   + YDSA+
Sbjct:    8 KTALVSVYHKEGLDEIITKLYEEGVEFLSTGGTRQFIESLGYPCKAVEDLTTYPSILGGRVKTLHPKIFGGILCRRDLEQDIQQIEKYEIPEIDLVIVDLYPF--EATVASGASEADIIEKIDIGGISLIRAAAKNYNDVIIVASQAQYKPLLDMLMEHGATSSLEERRWMAKEAFAVSSHYDSAI 191          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_SCHPO (Bifunctional purine biosynthesis protein ade10 OS=Schizosaccharomyces pombe GN=ade10 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 76/188 (40.43%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  118 ALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYDSAVSEWLWK 681
            AL+S+ DK  L  L   L   G  ++ +GGTA  +   G+ V  V  +T  PE+L GRVKTLHP +HGGILAR       D L E  I   D+VV NLYPF + +     +   + +E IDIGG  ++RAAAKNH  V ++ D  DY    +    ++  Q  R   A KAF   ASYD+A++++  K
Sbjct:    3 ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVKTLHPAVHGGILARDIPSDEKD-LVEQSIEKIDIVVCNLYPFRETIAKP-NVTIPEAVEEIDIGGVTLLRAAAKNHARVTILSDPADYATFTDKFLSDKLTQDDRNTYALKAFASTASYDAAITDYFRK 188          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_BUCBP (Bifunctional purine biosynthesis protein purH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=purH PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28
Identity = 69/192 (35.94%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQD--DQQFRRKLAWKAFQHVASYDSAVSEWLWK 681
            K  LIS+SD  ++      L      + +T GTA  L+ + +  T +   T FPE+++GR+KTLH  I+  ILA+   KH    + ++ I   D+VV+N YPF ++ ++   +   D IE+IDIGGPA++RAAAKN+K+VLVV     Y +++  +  N +   +  + K A  AF+H  +YD+ + ++L K
Sbjct:    8 KNVLISVSDTSNIIEFSKSLISKNIKLFATKGTANFLKKNNIYATDITNYTNFPEIMNGRIKTLHHKIYASILAQ--PKHDKKTIEKYNIILMDIVVINFYPF-EEASNNTNLHLNDIIEHIDIGGPAIVRAAAKNYKNVLVVTQPNLYQSIVNEMNLNNNIISETTKLKFATIAFKHTMNYDNNIYQYLSK 196          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_WIGBR (Bifunctional purine biosynthesis protein purH OS=Wigglesworthia glossinidia brevipalpis GN=purH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 74/190 (38.95%), Postives = 103/190 (54.21%), Query Frame = 1
Query:  118 ALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRKLAWK--AFQHVASYDSAVSEWLWK 681
            ALIS+SDK  + SL   L +    +++T GT   L   G+  T V +    PE+++GRVKTLHP IHGGIL+     +    L+   I   D+V+ N YPF  KV     I  E+ I+NIDIGG A+ R+AAKN+K V VVV+   Y  L   +  N     F+ +  +   AFQ+  SYD  +  +  K
Sbjct:   11 ALISVSDKTGIFSLAKNLIKHKVKLITTSGTYKYLLEKGIFSTSVSEYINHPEIINGRVKTLHPKIHGGILSNNKNINENKNLN---IKKIDMVITNFYPFKKKVKKE-NIKIENIIDNIDIGGVALARSAAKNYKYVTVVVNINQYSKLSSEMDKNSGSVSFKTRFYFSTLAFQYSYSYDKEIFNYFNK 196          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_THEMA (Bifunctional purine biosynthesis protein purH OS=Thermotoga maritima GN=purH PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 62/182 (34.07%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYDS 657
            K+ L+SL +K+    +   L E G+ I ++ GTA  L+++G+    V  +T F  +L G VKTLHP I  GIL    +              +D+V V+LYP  D                IDIGG A++RAAAKN K V    D E     +E      DD++ R+ LA   F   + YDS
Sbjct:    2 KRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGILGPEPR--------------WDVVFVDLYPPPD----------------IDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEI-----DDEETRKYLAGMTFAFTSVYDS 148          
The following BLAST results are available for this feature:
BLAST of FC925427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 468
Match NameE-valueIdentityDescription
PUR9_MICAN1.151e-3343.09Bifunctional purine biosynthesis protein purH OS=M... [more]
PUR9_CYAP71.151e-3344.39Bifunctional purine biosynthesis protein purH OS=C... [more]
PUR9_SYNY31.503e-3344.39Bifunctional purine biosynthesis protein purH OS=S... [more]
PUR9_BACTN3.701e-3244.09Bifunctional purine biosynthesis protein purH OS=B... [more]
PUR9_SCHPO2.399e-3140.43Bifunctional purine biosynthesis protein ade10 OS=... [more]
PUR9_BUCBP9.435e-2835.94Bifunctional purine biosynthesis protein purH OS=B... [more]
PUR9_WIGBR1.506e-2538.95Bifunctional purine biosynthesis protein purH OS=W... [more]
PUR9_THEMA2.180e-1634.07Bifunctional purine biosynthesis protein purH OS=T... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YE08FM1 TF Citrus clementina cDNA clone KN0AAP11YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925427 ID=FC925427; Name=FC925427; organism=Citrus clementina; type=EST; length=681bp
CACACTACCTCTCTGCGCTCCAGTTACTCTCCTATCAGAGCCATGGCCCA
CTCTCACACCGTTTCTGTTCCAACCAATCAACCCCCGTCCTCCTCCTCCT
CTCAAGCGAATAAGCAGGCATTGATTTCTTTGTCGGATAAAAAGGATTTG
GCATCTCTTGGAATTGGGTTACAAGAACTGGGGTACACAATTGTTTCCAC
CGGAGGAACAGCTACTTCTCTAGAAAATGATGGGGTGTCTGTGACTAAAG
TGGAGCAGCTCACCTGTTTCCCGGAAATGCTGGATGGCCGTGTAAAAACT
TTGCACCCCAACATTCACGGAGGTATTCTTGCCAGAAGAGACCAAAAGCA
TCATATGGATGCTCTCAGTGAGCATGGAATTGGTACATTTGATCTAGTAG
TAGTGAACTTGTACCCCTTCTATGATAAAGTTACTTCTGCTGGAGGGATT
GATTTTGAGGATGGAATTGAGAACATTGATATTGGGGGCCCTGCCATGAT
CAGAGCTGCTGCAAAGAACCACAAGGATGTGCTGGTTGTAGTTGACTCGG
AAGATTATCCTGCCCTCCTAGAATTTCTTAAAGGAAACCAGGATGATCAA
CAGTTTCGTAGAAAACTTGCTTGGAAAGCGTTTCAACATGTTGCTTCATA
TGATTCTGCAGTGTCAGAGTGGCTGTGGAAA
back to top