FC925427

Overview
NameFC925427
Unique NameFC925427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925427_ssr88 microsatellite FC925427_ssr88:88..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12581 contig Ccv1_Contig12581:199..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_BACWK (Bifunctional purine biosynthesis protein purH OS=Bacillus weihenstephanensis (strain KBAB4) GN=purH PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 98/191 (51.31%), Postives = 131/191 (68.59%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQD-DQQFRRKLAWKAFQHVASYDSAVSEWLWK 681
            K+AL+S+SDK  +     GL E G  ++STGGT   LE +G+ V  + ++T FPE++DGRVKTLHPNIHGG+LA RD + H+  ++E GI   D VVVNLYPF + +     + F D IENIDIGGP MIR+AAKNHK V V+VD  DY  +L  LK N +  ++ +RKLA K F+H A+YD+ +S +L K
Sbjct:    3 KRALVSVSDKTGVVEFVKGLLEQGIEVISTGGTKKLLEENGLQVIGISEVTGFPEIMDGRVKTLHPNIHGGLLAVRDNEMHVAQMNELGIQPIDFVVVNLYPFKETIAKP-DVTFADAIENIDIGGPTMIRSAAKNHKFVSVIVDPVDYDVVLAELKENGEVTEETKRKLAAKVFRHTAAYDALISNYLTK 192          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_ALKOO (Bifunctional purine biosynthesis protein purH OS=Alkaliphilus oremlandii (strain OhILAs) GN=purH PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 97/191 (50.79%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQ-QFRRKLAWKAFQHVASYDSAVSEWLWK 681
            K+AL+S+SDK+ +  L   L      I+STGGTA  L   G+ V  V ++T FPE LDGRVKTLHP +HGGILA RD  +HMD L E  I   DLVV+NLYPF + +  +  +   + IENIDIGGP M+RAAAKNH+DV V++D +DY  +LE +K N D +   R +LA K FQH A YD+ ++++L K
Sbjct:    3 KRALLSVSDKEGIVQLAQNLSSFNIEILSTGGTAKLLRESGIDVRDVSEVTGFPECLDGRVKTLHPAVHGGILAIRDNANHMDTLKELEITPIDLVVINLYPFKETILKS-DVTLAEAIENIDIGGPTMLRAAAKNHRDVTVIIDPKDYHRVLEEIKENGDTKLDTRYQLALKVFQHTAQYDALIADYLGK 192          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_ROSDO (Bifunctional purine biosynthesis protein purH OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=purH PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 100/190 (52.63%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQF--RRKLAWKAFQHVASYDSAVSEWL 675
            ++AL+S+SDK  L +LG  L   G  ++STGGTA +L + G+ V  V ++T FPEM+DGRVKTLHP +HGG+LA RD   H+ A+ EHGI   DLVVVNLYPF  + T A G  +++ IENIDIGGPAMIR+AAKNH  V VVVD EDY  L+  L+       +  R++LA  A+   A+YD+AVS W+
Sbjct:    8 RRALLSVSDKTGLVALGKALAARGVELLSTGGTARALRDAGLEVKDVAEVTGFPEMMDGRVKTLHPAVHGGLLALRDNDDHLAAMQEHGIAGIDLVVVNLYPF--EQTVAKGAQYDEVIENIDIGGPAMIRSAAKNHGFVSVVVDVEDYDVLIAQLEAYDGHTTYALRQRLAQTAYARTAAYDTAVSTWM 195          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_RHIME (Bifunctional purine biosynthesis protein purH OS=Rhizobium meliloti GN=purH PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 95/187 (50.80%), Postives = 126/187 (67.38%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYDSAVSEW 672
            K AL+S+SDK  +  L   L + G  ++STGGT  +L + G+ V+ V +LT FPE++DGRVKTLHP +HGG+LA RD   H DA+S HGI   DL V+NLYPF ++V + GG D+   +ENIDIGGPAMIRA+AKNH  V +V D  DY  LLE +        FR+K+A KA+   A+YD+ +S W
Sbjct:   17 KTALLSVSDKTGIVELARALNDKGIRLISTGGTHKALADAGLPVSDVSELTGFPEIMDGRVKTLHPGVHGGLLAIRDDAEHADAMSAHGITAIDLAVINLYPF-EEVRAKGG-DYPTTVENIDIGGPAMIRASAKNHAYVTIVTDPADYSPLLEEIADGATRYAFRQKMAAKAYARTAAYDATISNW 201          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_NEIG2 (Bifunctional purine biosynthesis protein purH OS=Neisseria gonorrhoeae (strain NCCP11945) GN=purH PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 102/190 (53.68%), Postives = 121/190 (63.68%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQD--DQQFRRKLAWKAFQHVASYDSAVSEWL 675
            K+ALISLSDK         L +LG  I+STGGTA  L + GV V +V   T FPEMLDGRVKTLHP IHGGIL RRD   H+  + EHGIG  DLV VNLYPF   +    G   ED IENIDIGGPAM+R+AAKN K V +V D+ D+PA+   L+ N      + R  L+ KAF H A YD  +S +L
Sbjct:    5 KRALISLSDKAGAVEFAQNLHKLGVEILSTGGTAKLLADAGVPVIEVADYTGFPEMLDGRVKTLHPKIHGGILGRRDLDEHVAKMEEHGIGNIDLVCVNLYPFAATIAKP-GCTLEDAIENIDIGGPAMVRSAAKNWKHVAIVTDTADFPAIAAELEANNGALSDKTRFNLSRKAFSHTAQYDGMISNYL 193          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_STRZP (Bifunctional purine biosynthesis protein purH OS=Streptococcus pneumoniae (strain P1031) GN=purH PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.320e-47
Identity = 92/188 (48.94%), Postives = 131/188 (69.68%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGN-QDDQQFRRKLAWKAFQHVASYDSAVSEW 672
            K+ LIS+SDK  +      L++LG+ I+STGGT  +L+N GV    ++ +T FPEM+DGRVKTLHPNIHGG+LARRD   H++A  ++ I   DLVVVNLYPF + +     + + D +ENIDIGGP+M+R+AAKNH  V VVVD  DY  +L+ L  N +   + R++LA K F+H A+YD+ ++++
Sbjct:    3 KRVLISVSDKAGIVEFAQELKKLGWEIISTGGTKVALDNAGVDTIAIDDVTGFPEMMDGRVKTLHPNIHGGLLARRDLDSHLEAAKDNKIELIDLVVVNLYPFKETILKP-DVTYADAVENIDIGGPSMLRSAAKNHASVTVVVDPADYAVVLDELAANGETSYETRQRLAAKVFRHTAAYDALIAKY 189          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_CLOTH (Bifunctional purine biosynthesis protein purH OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=purH PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.320e-47
Identity = 94/189 (49.74%), Postives = 129/189 (68.25%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQD-DQQFRRKLAWKAFQHVASYDSAVSEWL 675
            K+ALIS+SDK  +  +   LQ +G  I+STGGTA +L + G+ V  +  +T FPE LDGRVKTLHP +H GILA R  + HM  L E  I T D+V++NLYPF   +     +D  + IENIDIGGP MIRAAAKN++DV+V+VD  DY A+LE LK  +D   + + KLA+K F+H + YD+ ++++L
Sbjct:    3 KRALISVSDKTGIVEMARELQSMGVDIISTGGTAKTLSDAGIKVINISDVTGFPECLDGRVKTLHPKVHAGILAIRSNEEHMRQLKELNIETIDMVIINLYPFKQTILKE-NVDLSEAIENIDIGGPTMIRAAAKNYQDVVVIVDPSDYAAVLEELKTTKDVSLKTKFKLAYKVFEHTSHYDTLIAKYL 190          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_THEPX (Bifunctional purine biosynthesis protein purH OS=Thermoanaerobacter sp. (strain X514) GN=purH PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 99/190 (52.11%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLK--GNQDDQQFRRKLAWKAFQHVASYDSAVSEWL 675
            K+ALIS+S K+ +      L ELGY I+STGGT   L+ + V+V KV  +T FPE++DGRVKTLHP IHGG+LA RD + H+ AL EHGI   D+VV+NLYPF + +     +  E+ IENIDIGGP+MIRAAAKN+K V ++VD +DY  ++E +K  GN  ++  R  LA KAF H A YDS +  +L
Sbjct:    3 KKALISVSKKEGIVEFAKKLNELGYEIISTGGTYNLLKENRVNVVKVSDITGFPEIMDGRVKTLHPKIHGGLLAIRDNEEHIKALKEHGIEPIDIVVINLYPFKETILKE-NVTLEEAIENIDIGGPSMIRAAAKNYKYVTILVDPKDYDTVIEEIKQYGNTKEET-RFYLAAKAFGHTALYDSLIYNYL 190          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_THEP3 (Bifunctional purine biosynthesis protein purH OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=purH PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 99/190 (52.11%), Postives = 131/190 (68.95%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLK--GNQDDQQFRRKLAWKAFQHVASYDSAVSEWL 675
            K+ALIS+S K+ +      L ELGY I+STGGT   L+ + V+V KV  +T FPE++DGRVKTLHP IHGG+LA RD + H+ AL EHGI   D+VV+NLYPF + +     +  E+ IENIDIGGP+MIRAAAKN+K V ++VD +DY  ++E +K  GN  ++  R  LA KAF H A YDS +  +L
Sbjct:    3 KKALISVSKKEGIVEFAKKLNELGYEIISTGGTYNLLKENRVNVVKVSDITGFPEIMDGRVKTLHPKIHGGLLAIRDNEEHIKALKEHGIEPIDIVVINLYPFKETILKE-NVTLEEAIENIDIGGPSMIRAAAKNYKYVTILVDPKDYDTVIEEIKQYGNTKEET-RFYLAAKAFGHTALYDSLIYNYL 190          
BLAST of FC925427 vs. ExPASy Swiss-Prot
Match: PUR9_STRA5 (Bifunctional purine biosynthesis protein purH OS=Streptococcus agalactiae serotype V GN=purH PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 94/188 (50.00%), Postives = 131/188 (69.68%), Query Frame = 1
Query:  112 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENDGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALL-EFLKGNQDDQQFRRKLAWKAFQHVASYDSAVSEW 672
            K+ALIS+SDK  +      L+ LG+ I+STGGT  +L++ GV    ++ +T FPEM+DGRVKTLHPNIHGG+LARRD   H+ A  ++ I   DLVVVNLYPF + +     + ++  +ENIDIGGP+M+R+AAKNH  V VVVDS DY  +L E    +Q   + R++LA KAF+H A+YD+ ++E+
Sbjct:    3 KRALISVSDKSGIIDFAKELKNLGWDIISTGGTKVALDDAGVETIAIDDVTGFPEMMDGRVKTLHPNIHGGLLARRDADSHLQAAKDNNIELIDLVVVNLYPFKETILRP-DVTYDLAVENIDIGGPSMLRSAAKNHASVTVVVDSADYATVLGELADASQTTFKTRQRLAAKAFRHTAAYDALIAEY 189          
The following BLAST results are available for this feature:
BLAST of FC925427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 468
Match NameE-valueIdentityDescription
PUR9_BACWK2.388e-4751.31Bifunctional purine biosynthesis protein purH OS=B... [more]
PUR9_ALKOO2.388e-4750.79Bifunctional purine biosynthesis protein purH OS=A... [more]
PUR9_ROSDO3.119e-4752.63Bifunctional purine biosynthesis protein purH OS=R... [more]
PUR9_RHIME3.119e-4750.80Bifunctional purine biosynthesis protein purH OS=R... [more]
PUR9_NEIG23.119e-4753.68Bifunctional purine biosynthesis protein purH OS=N... [more]
PUR9_STRZP5.320e-4748.94Bifunctional purine biosynthesis protein purH OS=S... [more]
PUR9_CLOTH5.320e-4749.74Bifunctional purine biosynthesis protein purH OS=C... [more]
PUR9_THEPX6.948e-4752.11Bifunctional purine biosynthesis protein purH OS=T... [more]
PUR9_THEP36.948e-4752.11Bifunctional purine biosynthesis protein purH OS=T... [more]
PUR9_STRA56.948e-4750.00Bifunctional purine biosynthesis protein purH OS=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE08FM1 TF Citrus clementina cDNA clone KN0AAP11YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925427 ID=FC925427; Name=FC925427; organism=Citrus clementina; type=EST; length=681bp
CACACTACCTCTCTGCGCTCCAGTTACTCTCCTATCAGAGCCATGGCCCA
CTCTCACACCGTTTCTGTTCCAACCAATCAACCCCCGTCCTCCTCCTCCT
CTCAAGCGAATAAGCAGGCATTGATTTCTTTGTCGGATAAAAAGGATTTG
GCATCTCTTGGAATTGGGTTACAAGAACTGGGGTACACAATTGTTTCCAC
CGGAGGAACAGCTACTTCTCTAGAAAATGATGGGGTGTCTGTGACTAAAG
TGGAGCAGCTCACCTGTTTCCCGGAAATGCTGGATGGCCGTGTAAAAACT
TTGCACCCCAACATTCACGGAGGTATTCTTGCCAGAAGAGACCAAAAGCA
TCATATGGATGCTCTCAGTGAGCATGGAATTGGTACATTTGATCTAGTAG
TAGTGAACTTGTACCCCTTCTATGATAAAGTTACTTCTGCTGGAGGGATT
GATTTTGAGGATGGAATTGAGAACATTGATATTGGGGGCCCTGCCATGAT
CAGAGCTGCTGCAAAGAACCACAAGGATGTGCTGGTTGTAGTTGACTCGG
AAGATTATCCTGCCCTCCTAGAATTTCTTAAAGGAAACCAGGATGATCAA
CAGTTTCGTAGAAAACTTGCTTGGAAAGCGTTTCAACATGTTGCTTCATA
TGATTCTGCAGTGTCAGAGTGGCTGTGGAAA
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