FC925428
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29 Identity = 70/153 (45.75%), Postives = 85/153 (55.56%), Query Frame = 1 Query: 118 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576 G + +YVGNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE + YRVIV GLP + SWQDLKDHMR AGDVC+A Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR----GVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYA 152
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29 Identity = 72/156 (46.15%), Postives = 86/156 (55.13%), Query Frame = 1 Query: 109 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576 E G IYVGNLPSD+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY++ CRLRVE S++RV+V GLP S SWQDLKDHMR+AGDVC+A Sbjct: 8 ERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR----------------------TYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA 141
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 71/156 (45.51%), Postives = 86/156 (55.13%), Query Frame = 1 Query: 109 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576 E G IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY++ CRLRVE S++RV+V GLP S SWQDLKDHMR+AGDVC+A Sbjct: 7 ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR----------------------AYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA 140
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29 Identity = 71/156 (45.51%), Postives = 86/156 (55.13%), Query Frame = 1 Query: 109 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576 E G IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY++ CRLRVE S++RV+V GLP S SWQDLKDHMR+AGDVC+A Sbjct: 7 ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR----------------------TYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA 140
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12 Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1 Query: 136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 351 +YVG LPSD E+E++F ++GRI + + RPP + FVE+++ RDAEDA+R DG G R RVEL+ Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVW--VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74 The following BLAST results are available for this feature:
BLAST of FC925428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925428 ID=FC925428; Name=FC925428; organism=Citrus clementina; type=EST; length=683bpback to top |