FC925428

Overview
NameFC925428
Unique NameFC925428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 70/153 (45.75%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  118 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            G   + +YVGNLP D+RE EVED+F+KYGRI  +++K   R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE                                             + YRVIV GLP + SWQDLKDHMR AGDVC+A
Sbjct:    5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR----GVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYA 152          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 72/156 (46.15%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  109 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            E  G     IYVGNLPSD+RE ++EDLFYKYGRI +IELK       + FV FE+ RDAEDAI GR+GY++  CRLRVE                                             S++RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:    8 ERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR----------------------TYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA 141          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 71/156 (45.51%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  109 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            E  G     IYVGNLP+D+RE ++EDLFYKYGRI +IELK       + FV FE+ RDAEDAI GR+GY++  CRLRVE                                             S++RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:    7 ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR----------------------AYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA 140          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 71/156 (45.51%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  109 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 576
            E  G     IYVGNLP+D+RE ++EDLFYKYGRI +IELK       + FV FE+ RDAEDAI GR+GY++  CRLRVE                                             S++RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:    7 ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR----------------------TYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA 140          
BLAST of FC925428 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  136 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 351
            +YVG LPSD    E+E++F ++GRI  +   +  RPP + FVE+++ RDAEDA+R  DG    G R RVEL+
Sbjct:    5 VYVGGLPSDATSQELEEIFDRFGRIRKVW--VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74          
The following BLAST results are available for this feature:
BLAST of FC925428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RSP3_CAEEL2.246e-2945.75Probable splicing factor, arginine/serine-rich 3 O... [more]
SFRS9_MOUSE2.933e-2946.15Splicing factor, arginine/serine-rich 9 OS=Mus mus... [more]
SFRS9_RAT6.534e-2945.51Splicing factor, arginine/serine-rich 9 OS=Rattus ... [more]
SFRS9_HUMAN6.534e-2945.51Splicing factor, arginine/serine-rich 9 OS=Homo sa... [more]
RSP6_CAEEL9.479e-1247.22Probable splicing factor, arginine/serine-rich 6 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE09FM1 TF Citrus clementina cDNA clone KN0AAP11YE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925428 ID=FC925428; Name=FC925428; organism=Citrus clementina; type=EST; length=683bp
TCGGAAGCTTTGGTCGTTTTCGGTAAGGACCGGCGGGTCGTCACGTGGTG
GTTCAGCGACGCTTCTCCTGCTCATAAATCTTGTGAAATTTTATAGTCCT
TACCATCAGAAATGAGTGGTCGTTTTTCTCGTACAATCTATGTTGGCAAC
CTGCCCTCTGATATAAGAGAATATGAAGTTGAGGATCTCTTTTACAAGTA
TGGCCGTATATTGGATATTGAATTAAAGATCCCCCCTCGCCCGCCATGTT
ATTGTTTTGTTGAGTTTGAGAATGCTCGTGATGCCGAAGATGCTATTAGA
GGTCGTGATGGCTATAACTTTGATGGTTGTCGTTTAAGGGTTGAGCTCGC
CCATGGTGGTAGTGGTAGAGGTCCATCATCAAGTGATCGTCGTGGTGGCT
ATGGTGGTGGTGGTGCTGGTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCT
GGTGCTGGTCGTTTTGGCATCTCACGCCATTCTGAATATCGAGTTATTGT
CCGCGGGCTTCCTTCTTCAGCTTCCTGGCAGGATTTAAAGGATCATATGC
GAAAAGCAGGCGATGTTTGTTTTGCCTGAAGTTTCCCGTGATAGTGAGGG
GACTTATGGGGTCGTTGATTATACTAATCCTGAAGACATGAAATATGGCA
TTCCGAAAACTTGATGACACTGAATTTAAAAAT
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