FC925431

Overview
NameFC925431
Unique NameFC925431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_SALAR (L-lactate dehydrogenase [cytochrome] OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=lldD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.591e-21
Identity = 68/235 (28.94%), Postives = 107/235 (45.53%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     +  + ++  K + D G N                     +        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_SALA4 (L-lactate dehydrogenase [cytochrome] OS=Salmonella agona (strain SL483) GN=lldD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.591e-21
Identity = 68/235 (28.94%), Postives = 107/235 (45.53%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     +  + ++  K + D G N                     +        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_CITK8 (L-lactate dehydrogenase [cytochrome] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lldD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.591e-21
Identity = 69/235 (29.36%), Postives = 105/235 (44.68%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLE-----------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R R+L ++S + L TT+ + K+S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P                             G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEYTLRRNVEDLSEVALRQRVLKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAALRRYWQAATHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_XANC5 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21
Identity = 71/235 (30.21%), Postives = 107/235 (45.53%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNL---------------------EGLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   L+ +                      G +S    S TG  ++        D S++WKDL+W+R
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGLLGRPHDLGNISAYRGSPTGLQDYIGWLGANFDPSIAWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_XANAC (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas axonopodis pv. citri GN=lldD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 71/235 (30.21%), Postives = 106/235 (45.11%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP--PLKNL---------------------EGLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            ++++  A   LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P   L+ +                      G +S    S TG  ++        D S++WKDL+W+R
Sbjct:    7 SDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGLLGKPHDLGNISAYRGSPTGLQDYIGWLGANFDPSIAWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21
Identity = 69/235 (29.36%), Postives = 106/235 (45.11%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKM-------------ITPPLKNLE----------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R R+L ++S + L T + +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M             +T P    +          G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYSEHTLRRNVEDLSEVALRQRVLKNMSDLSLETKLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADARGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGANAAMRRYWQAVTHPQWAWDVGVNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP7 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=lldD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 71/235 (30.21%), Postives = 106/235 (45.11%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKM-------------ITPPLKNLE----------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R RIL ++S + L TT+ + K++ P  +AP     +    GEV  A AA        LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M             +T P    +          G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAALRRYWQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP3 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae (strain 342) GN=lldD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 71/235 (30.21%), Postives = 106/235 (45.11%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKM-------------ITPPLKNLE----------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R RIL ++S + L TT+ + K++ P  +AP     +    GEV  A AA        LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M             +T P    +          G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAALRRYWQAVTHPQWAWDVGLNGRPHDLGNISAYLGQPTGLEDYIGWLANNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 71/235 (30.21%), Postives = 107/235 (45.53%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTG--------SNFEA-DANET------------MDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ + P     +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G         N  A   N T             D S++WKDL+W+R
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALGPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 71/235 (30.21%), Postives = 107/235 (45.53%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTG--------SNFEA-DANET------------MDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  EHTL+ NV     +  R R+L ++S + LST +    ++ P+ + P     +    GEV  ARAAA+      LS  S   IEEVA +     ++QLYV K R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G         N  A   N T             D S++WKDL+W+R
Sbjct:    7 SDYRAAAQARLPPFLFHYIDGGAYAEHTLRRNVSDLADVALRQRVLRNMSDLRLSTELFGETLAMPVALGPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVAPAIERPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIR 241          
The following BLAST results are available for this feature:
BLAST of FC925431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SALAR1.591e-2128.94L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALA41.591e-2128.94L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_CITK81.591e-2129.36L-lactate dehydrogenase [cytochrome] OS=Citrobacte... [more]
LLDD_XANC52.077e-2130.21L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANAC2.713e-2130.21L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_ENT383.544e-2129.36L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_KLEP74.628e-2130.21L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_KLEP34.628e-2130.21L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_XANOR6.045e-2130.21L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP6.045e-2130.21L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE10FM1 TF Citrus clementina cDNA clone KN0AAP11YE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925431 ID=FC925431; Name=FC925431; organism=Citrus clementina; type=EST; length=758bp
TTGACTTTAACTCTTCCCCCGACTCACTGTTGTAATCTGCTTCACGATCG
ACCTTCATCAGTTGAAATTTTTAGTCATTCGGGTTTCACATGGCAGCTGA
ACCTGTTAATTTGAATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAA
AAATGTATTATGATTTCTACGCTGGTGGAGCAGAAGATGAACATACCCTA
AAAGAGAATGTGGAAGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCT
TGTCGATGTCAGCAGAATAGATTTATCGACTACTATACTTGATTACAAAA
TCTCGGCTCCCATTATCATTGCTCCAACGGCTTTCCATAAGCTTGCAAAC
CCTGAAGGAGAAGTAGCCACAGCCAGAGCAGCAGCTTCATGTAACACCAT
AATGGTTTTATCCTTCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCA
GCTCCAATGCTGTTCGCTTCTATCAATTATATGTATTCAAGAAACGAGAT
ATAACAGCTACTCTAGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCT
TGTCCTAACTGCTGATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAA
AGAACAAAATGATTACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCA
ACCAAAGTCAGCTCTGATACAGGTTCGAATTTTGAAGCTGATGCCAATGA
GACCATGGATGCTTCTTTAAGTTGGAAGGATTTAAAATGGCTAAGATCTA
TTACAAAC
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