FC925431

Overview
NameFC925431
Unique NameFC925431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:77..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ECOK1 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O1:K1 / APEC GN=lldD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 69/235 (29.36%), Postives = 107/235 (45.53%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ECO45 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 69/235 (29.36%), Postives = 107/235 (45.53%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLANNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBY (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AYE) GN=lldD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLE-----------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P                             G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBT (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=lldD PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLE-----------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P                             G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBS (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain SDF) GN=lldD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLE-----------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P                             G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBC (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ACICU) GN=lldD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLE-----------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P                             G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB5 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB0057) GN=lldD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLE-----------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P                             G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB3 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB307-0294) GN=lldD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLE-----------------------GLLSTKVSSDTG-SNFEADANETMDASLSWKDLKWLR 746
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P                             G +S  +   TG  ++        D S+SWKDL+W+R
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYMQSVFHPHWSWNVGLMGRPHDLGNISKYLGKPTGLEDYIGWLGSNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ECO27 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22
Identity = 69/235 (29.36%), Postives = 106/235 (45.11%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLKWLR 746
            ++++  A+  LP   + +  GGA  E+TL  NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDL+W+R
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLHRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIR 241          
BLAST of FC925431 vs. ExPASy Swiss-Prot
Match: LLDD_ACIAD (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter sp. (strain ADP1) GN=lldD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22
Identity = 68/235 (28.94%), Postives = 107/235 (45.53%), Query Frame = 3
Query:  114 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTG---------------------SNFEADANETMDASLSWKDLKWLR 746
            N+++E A+  LP   + +  GGA  E+TLK NVE   +I  R R+L D+S + L T + +  +S P+ ++P     +    GEV  A AA        +S  S   IEEV  +     ++QLYV + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ ++  + + D G                      ++ +      D S+SWKDL+W+R
Sbjct:    7 NDYREAAKRRLPPFLFHYIDGGAYAEYTLKRNVEDLSQIALRQRVLNDMSSLSLETKLFNETLSMPVALSPVGLTGMYARRGEVQAAVAADKKGIPFTMSTVSVCPIEEVTPAIKRPMWFQLYVLRDRGFMKNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQSMMHPQWAWDVGLLGRPHDLGNISKYLGKTTGLEDYISWLGSNFDPSISWKDLEWIR 241          
The following BLAST results are available for this feature:
BLAST of FC925431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ECOK14.186e-2229.36L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO454.186e-2229.36L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ACIBY4.186e-2230.21L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBT4.186e-2230.21L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBS4.186e-2230.21L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBC4.186e-2230.21L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIB54.186e-2230.21L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIB34.186e-2230.21L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ECO275.467e-2229.36L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ACIAD5.467e-2228.94L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE10FM1 TF Citrus clementina cDNA clone KN0AAP11YE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925431 ID=FC925431; Name=FC925431; organism=Citrus clementina; type=EST; length=758bp
TTGACTTTAACTCTTCCCCCGACTCACTGTTGTAATCTGCTTCACGATCG
ACCTTCATCAGTTGAAATTTTTAGTCATTCGGGTTTCACATGGCAGCTGA
ACCTGTTAATTTGAATGAGTTCCAAGAATTGGCAAGGCTGGCCCTTCCAA
AAATGTATTATGATTTCTACGCTGGTGGAGCAGAAGATGAACATACCCTA
AAAGAGAATGTGGAAGCCTTTCATAGAATTACGTTTCGGCCAAGAATTCT
TGTCGATGTCAGCAGAATAGATTTATCGACTACTATACTTGATTACAAAA
TCTCGGCTCCCATTATCATTGCTCCAACGGCTTTCCATAAGCTTGCAAAC
CCTGAAGGAGAAGTAGCCACAGCCAGAGCAGCAGCTTCATGTAACACCAT
AATGGTTTTATCCTTCACATCTAGCAGCACCATAGAGGAGGTTGCGGCCA
GCTCCAATGCTGTTCGCTTCTATCAATTATATGTATTCAAGAAACGAGAT
ATAACAGCTACTCTAGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCT
TGTCCTAACTGCTGATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAA
AGAACAAAATGATTACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCA
ACCAAAGTCAGCTCTGATACAGGTTCGAATTTTGAAGCTGATGCCAATGA
GACCATGGATGCTTCTTTAAGTTGGAAGGATTTAAAATGGCTAAGATCTA
TTACAAAC
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