FC925435

Overview
NameFC925435
Unique NameFC925435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9354 contig Ccv1_Contig9354:20..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.581e-17
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  507 PKDNNTKAKVSRFYVRASDSNST---LIVK---------DGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            PK  +T+ ++S     AS    T   +IV+         DGY+WRKYGQKV + NP PR+Y+KC+  P C V+K V+R+A DP  +V TYEG+HNH  P
Sbjct:  371 PKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT-TPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 468          

HSP 2 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  588 DGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSK 779
            DGY WRKYGQK  + +  PR+Y+KC+  P CPVKKKV+RS  D  +    Y+G+HNH  P ++K
Sbjct:  230 DGYNWRKYGQKQVKGSEFPRSYYKCT-NPGCPVKKKVERSL-DGQVTEIIYKGQHNHEPPQNTK 291          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  501 KRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSK 779
            K  K+N  + + +R           L  +DGY+WRKYGQK  +++P PR+Y++C+ A SC VKK+V+RS  DPS +V TYEG+H H  P  S+
Sbjct:  148 KAKKNNQKRQREARVAFMTKSEVDHL--EDGYRWRKYGQKAVKNSPFPRSYYRCTTA-SCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSR 237          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK11_ARATH (Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  498 CKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQ 764
            CK+ + N  K  V    V A  +    I  D Y WRKYGQK  + +P PR Y+KCS    CP +K V+R+ +DP++L+ TYEGEH H Q
Sbjct:  220 CKKSRKNRMKRTVR---VPAISAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDPAMLIVTYEGEHRHNQ 305          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 3
Query:  579 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            I+ DGY+WRKYGQKV + NP+PR+Y+KC+ AP C V+K V+R++ D   ++ TYEG+HNH  P
Sbjct:  485 ILDDGYRWRKYGQKVVKGNPNPRSYYKCT-APGCTVRKHVERASHDLKSVITTYEGKHNHDVP 546          

HSP 2 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  585 KDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSK 779
            +DGY WRKYGQK+ + +  PR+Y+KC+  P+C VKKKV+RS E   I    Y+G HNH +P  ++
Sbjct:  273 EDGYNWRKYGQKLVKGSEYPRSYYKCT-NPNCQVKKKVERSREG-HITEIIYKGAHNHLKPPPNR 335          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  522 TKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            TK KV +  V     +  L + DGY+WRKYGQK  +D+P PR Y++C+    C VKK+V+RS  DPS ++ TYEG+H HP+P
Sbjct:   99 TKKKVPK--VSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCT-TTWCDVKKRVERSFSDPSSVITTYEGQHTHPRP 177          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  579 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 770
            I+ DGY+WRKYGQKV + NP+PR+Y+KC+F   C V+K V+R+ +DP  ++ TYEG+H H  PT
Sbjct:  232 ILDDGYRWRKYGQKVVKGNPNPRSYYKCTFT-GCFVRKHVERAFQDPKSVITTYEGKHKHQIPT 294          

HSP 2 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  588 DGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSK 779
            DGY WRKYGQK  + + +PR+YFKC++ P+C  KKKV+ S     ++   Y+G HNHP+P  +K
Sbjct:  118 DGYNWRKYGQKQVKGSENPRSYFKCTY-PNCLTKKKVETSLVKGQMIEIVYKGSHNHPKPQSTK 180          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 3
Query:  429 DHCHTIGFNVHAXXXXXXXXXXXCKRPKDNNTKAKVSRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 770
            +H H+ GF+              CK+ + N  K  V    V A  +    I  D Y WRKYGQK  + +P PR Y+KCS    CP +K V+R+ +D ++L+ TYEGEH H Q T
Sbjct:  196 EHDHSEGFS--GKISGSGNGKCHCKKSRKNRMKRTVR---VPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHHQST 304          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK50_ARATH (Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  513 DNNTKAKVSRFYVRAS--DSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNH 758
            DN  K +  +   R +    +   ++ DG++WRKYG+K+ +++P PR Y+KCS    CPVKK+V+R  +DPS ++ TYEG HNH
Sbjct:   87 DNQNKKEKKKIKGRVAFKTRSEVEVLDDGFKWRKYGKKMVKNSPHPRNYYKCS-VDGCPVKKRVERDRDDPSFVITTYEGSHNH 169          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.059e-15
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  579 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQ 764
            I  D Y WRKYGQK  + +P PR Y+KCS    CP +K V+R  EDP++L+ TYE EHNHP+
Sbjct:  311 IPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHPK 372          
BLAST of FC925435 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 3
Query:  579 IVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQP 767
            ++ DGY+WRKYGQKV + NP PR+Y+KC+  P+C V+K V+R++ D   ++ TYEG+HNH  P
Sbjct:  304 LLDDGYRWRKYGQKVVKGNPHPRSYYKCT-TPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365          

HSP 2 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  588 DGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPTDSK 779
            DGY WRKYGQK  +    PR+Y+KC+   +CPVKKKV+RS+ D  I    Y+G+H+H +P + +
Sbjct:  168 DGYNWRKYGQKPIKGCEYPRSYYKCTHV-NCPVKKKVERSS-DGQITQIIYKGQHDHERPQNRR 229          
The following BLAST results are available for this feature:
BLAST of FC925435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRKY4_ARATH9.581e-1745.45Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK23_ARATH2.788e-1644.09Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK11_ARATH2.788e-1644.94Probable WRKY transcription factor 11 OS=Arabidops... [more]
WRKY2_ARATH3.641e-1655.56Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK68_ARATH4.755e-1648.78Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK26_ARATH4.755e-1654.69Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK17_ARATH4.755e-1638.60Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRK50_ARATH1.059e-1542.86Probable WRKY transcription factor 50 OS=Arabidops... [more]
WRK21_ARATH1.059e-1554.84Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK58_ARATH1.384e-1552.38Probable WRKY transcription factor 58 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI02FM1 TF Citrus clementina cDNA clone KN0AAP3YI02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925435 ID=FC925435; Name=FC925435; organism=Citrus clementina; type=EST; length=790bp
CTTAGATTCTCAATTTTTTAACAAGCTATAGGCCTATAGCTCTCTGGTCA
TTTGATCAGATTTGCTCGCATATATTTTCTTTTTCAAGTTCTTGTGTTAG
TTCTACAATTTGGTCAATGGATTCAACGTGGGTGGACACCTCTCTTGACC
TCAATCTCAATCTTCTGAATCACAGTAGTGAAGTTCCGAAGAGAGAGTTT
AAGGGAGATCACTTTGCTGAATTTGAAGAGAGAGCTTCAGTTAAACAAGA
GACTGGAATTTTGGTGGAGGAATTGAATAGGATAAGCACTGAGAACAAGA
AGCTGAATGAAATGCTTTCCATTTTGTGTAAGAATTACAACAATTTGCGG
CAGCAGTACATGGATTTGATGAACAAGAACACAGAAAATGAAGTTGGAAT
ATCAAAGAAGAGGAAGGCTGAGAGTGAAGATCATTGCCACACGATTGGCT
TCAATGTACACGCTACTGAGTCCAGCACTAGTACTGACGAAGAGTCATGC
AAAAGGCCAAAGGATAACAACACCAAGGCAAAAGTTTCTAGGTTTTATGT
GAGAGCCAGTGATTCAAATTCAACCCTGATTGTGAAGGATGGGTATCAAT
GGAGAAAGTATGGCCAAAAGGTTACAAGAGACAACCCATCACCTAGGGCT
TACTTCAAGTGTTCTTTCGCCCCAAGCTGTCCCGTAAAGAAGAAGGTGCA
AAGAAGTGCTGAGGATCCATCAATTTTAGTGGCAACTTATGAAGGAGAGC
ATAATCATCCTCAGCCTACGGATTCAAAAGCTGAATTATC
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