FC925451

Overview
NameFC925451
Unique NameFC925451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 5.881e-92
Identity = 157/196 (80.10%), Postives = 173/196 (88.27%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+KIIAEYIWIGGSG+D+R KARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGN+ILVMCDAY+PAGEPIPTNKRHAAAK+FSH DVVAEE WYGIEQEYTLLQKD+ WPL                   ADKA+GRD+V++HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   15 TEKIIAEYIWIGGSGLDLRCKARTLPGPVTDPSELPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNHILVMCDAYSPAGEPIPTNKRHAAAKVFSHPDVVAEETWYGIEQEYTLLQKDINWPLGWPAGGYPGPQGPYYCSVGADKAFGRDVVEAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAG 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.681e-92
Identity = 159/196 (81.12%), Postives = 171/196 (87.24%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAKIFS  +V AEEPWYGIEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+G
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.003e-91
Identity = 158/195 (81.03%), Postives = 170/195 (87.18%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            TDK+IAEYIW+GGSGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRG+NILVMCDAYTPAGEPIPTNKR+ AAKIF H DV AEEPWYG+EQEYTLLQKDV+WPL                   A+KA+GRDIVDSHYKAC+YAGINISGINGEVMPGQWEFQVGP++GISA
Sbjct:   16 TDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIFGHPDVAAEEPWYGLEQEYTLLQKDVQWPLGWPLGGFPGPQGPYYCGTGANKAFGRDIVDSHYKACIYAGINISGINGEVMPGQWEFQVGPSIGISA 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.310e-91
Identity = 158/196 (80.61%), Postives = 170/196 (86.73%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+KIIAEYIW+GGSGMD+RSKARTLPGPV DP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIFSH DVVAE PWYGIEQEYTLLQKDV WPL                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   16 TEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPSVGISAG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 1.310e-91
Identity = 159/195 (81.54%), Postives = 172/195 (88.21%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            ++KIIAEYIW+GGSGMDMRSKARTLPGPV+DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAA+IF++ DV+AE PWYGIEQEYTLLQKDV WPL                   ADK++GRDIVD+HYKA LYAGINISGINGEVMPGQWEFQVGP+VGISA
Sbjct:   16 SEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDVNWPLGWPIGGFPGPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISA 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 2.235e-91
Identity = 158/195 (81.03%), Postives = 171/195 (87.69%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            T+++IAEYIW+GGSGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQ IF+DPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIFS+ +VVAEEPWYGIEQEYTLLQKDV+WP+                   A+KA+GRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP+VGISA
Sbjct:   16 TERVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQTIFRDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSNPEVVAEEPWYGIEQEYTLLQKDVQWPVGWPLGGFPGPQGPYYCGIGANKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISA 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.235e-91
Identity = 157/196 (80.10%), Postives = 169/196 (86.22%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            ++KIIAEYIW+GGSGMD+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFR+GNNILV+CD YTPAGEP+PTNKRH AAKIFSH DV AE PWYGIEQEYTLLQKD  WPL                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   16 SEKIIAEYIWVGGSGMDLRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGQDSEVILYPQAIFKDPFRQGNNILVICDVYTPAGEPLPTNKRHNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.235e-91
Identity = 158/195 (81.03%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            TD+IIAEYIWIGGSG+DMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF    VVAEE WYGIEQEYTLLQKD+KWP+                   ADKA+GRDIVDSHYKACLYAGIN+SG NGEVMPGQWEFQVGP VGI+A
Sbjct:   16 TDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFEDPSVVAEETWYGIEQEYTLLQKDIKWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAA 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 8.492e-91
Identity = 156/196 (79.59%), Postives = 170/196 (86.73%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+KIIAEYIW+GGSG+D+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIFSH DV AE PWYGIEQEYTLLQKD+ WPL                   ADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.109e-90
Identity = 156/196 (79.59%), Postives = 170/196 (86.73%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+KIIAEYIW+GGSG+D+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIFSH DV AE PWYGIEQEYTLLQKD+ WPL                   ADKA+GRDIVD+HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRDIVDAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAG 211          
The following BLAST results are available for this feature:
BLAST of FC925451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA1_PEA5.881e-9280.10Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLNA4_MAIZE7.681e-9281.12Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA2_SOYBN1.003e-9181.03Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA2_PHAVU1.310e-9180.61Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLN12_ARATH1.310e-9181.54Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA3_PHAVU2.235e-9181.03Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA3_MEDSA2.235e-9180.10Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLN14_ARATH2.235e-9181.03Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLNA3_PEA8.492e-9179.59Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA4_PEA1.109e-9079.59Glutamine synthetase root isozyme B OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI09FM1 TF Citrus clementina cDNA clone KN0AAP3YI09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925451 ID=FC925451; Name=FC925451; organism=Citrus clementina; type=EST; length=714bp
AGCACATTAACTTTCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTG
TTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATC
TCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTAC
ATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCT
TCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATG
GTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTAT
CCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGT
TATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAA
GACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAGAA
CCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAA
ATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCAT
ACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAGAC
TCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAA
TGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTG
GAATTTCTGCTGGA
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