FC925451

Overview
NameFC925451
Unique NameFC925451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.449e-90
Identity = 158/196 (80.61%), Postives = 169/196 (86.22%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+KIIAEYIWIGGSGMD+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR+ AAKIFS  +V AEEPWYGIEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+G
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.471e-90
Identity = 154/196 (78.57%), Postives = 171/196 (87.24%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+KIIAEYIW+GGSG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILV+CD YTP+G+PIPTNKRHAAAKIFSH DV AEEPW+GIEQEYTLLQKD+ WP+                   A+KA+GRDIVDSHYKACLYAGINISGIN EVMPGQWEFQVGP++GISAG
Sbjct:   16 TEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVICDTYTPSGKPIPTNKRHAAAKIFSHPDVAAEEPWFGIEQEYTLLQKDIHWPIGMALGGFPGPQGPYYCGTGAEKAFGRDIVDSHYKACLYAGINISGINAEVMPGQWEFQVGPSIGISAG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.471e-90
Identity = 158/196 (80.61%), Postives = 166/196 (84.69%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQA GEDSEVILYPQAIFKDPFR+GNNILVMCDAYTPAG+PIPTNKRH AAKIFSH DV  EEPWYGIEQEYTL+QKDV WP+                   ADKA GRDIVD+HYKACLYAGI ISGINGEVMPGQWEFQVGP  GIS+G
Sbjct:   16 TGKIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.389e-90
Identity = 157/196 (80.10%), Postives = 165/196 (84.18%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDK+IAEYIWIGGSG D+RSKARTL GPV+ PSKLPKWNYDGSSTGQAPGEDSEVI   +  FKDPFRRGNNILV+CD YTPAGEPIPTNKRH AAKIFSH +VVAE PWYGIEQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   16 TDKVIAEYIWIGGSGTDLRSKARTLTGPVNHPSKLPKWNYDGSSTGQAPGEDSEVIYILRQFFKDPFRRGNNILVICDTYTPAGEPIPTNKRHGAAKIFSHPEVVAEVPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA1_SOYBN (Glutamine synthetase cytosolic isozyme 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.092e-89
Identity = 156/196 (79.59%), Postives = 169/196 (86.22%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+K+IAEYIWIGGSGMD+RSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSE I Y    F+DPFRRGNNILV+CDAYTPAGEPIPTNKRHAAAK+FSH DVVAE PWYGIEQEYTLLQKD++WPL                   ADKA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   16 TEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSELPKWNYDGSSTGQAPGEDSEAI-YTHKPFQDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKVFSHPDVVAEVPWYGIEQEYTLLQKDIQWPLGWPVGGFPGPQGPYYCGVGADKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGISAG 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.732e-89
Identity = 152/196 (77.55%), Postives = 168/196 (85.71%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDKIIAEYIW+GGSG+D+RSKART+ GP++DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTP GEPIP+NKR+ AA +FSH DV AE PWYGIEQEYTLLQKD+ WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   16 TDKIIAEYIWVGGSGIDLRSKARTVKGPITDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPQGEPIPSNKRYKAATVFSHPDVAAEVPWYGIEQEYTLLQKDLSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.568e-89
Identity = 152/196 (77.55%), Postives = 169/196 (86.22%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TD+IIAEYIWIGG+G+D+RSKART+ GP++DP +LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GN+ILVMCD YTP GEPIPTNKR++AAK+FSH DV AE PWYGIEQEYTLLQKDV WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAG
Sbjct:   16 TDRIIAEYIWIGGTGIDLRSKARTVKGPITDPIQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNHILVMCDCYTPQGEPIPTNKRYSAAKVFSHPDVAAEVPWYGIEQEYTLLQKDVSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAG 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.086e-89
Identity = 153/195 (78.46%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            +DKIIAEYIW+GGSG+D+RSKART+ GP++D S+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG+NILVMCD YTP GEPIPTNKRH+AAKIFSH DVVAE PWYGIEQEYTLLQKDV WPL                   A+KA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGI+A
Sbjct:   16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAA 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 1.771e-88
Identity = 156/195 (80.00%), Postives = 167/195 (85.64%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            TDKIIAEYIWIGGSGMD+RSKARTL GPVSDPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGN+ILVMCDAYTPAGEPIPTNKR AAAKIFS+ +V  E  WYGIEQEYTLLQKD  WPL                   ADKA+GRDIVD+HYKACLYAG+NISGINGEVMPGQWEFQVGP+VGI+A
Sbjct:   16 TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIFSNPEVEKEVTWYGIEQEYTLLQKDTNWPLGWPLGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGIAA 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 8.788e-88
Identity = 153/196 (78.06%), Postives = 163/196 (83.16%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T+KIIAEYIWIGGSGMD+RSKAR LPGPV+ PSKLPKWNYDGSSTGQAPGEDSEVILYPQAI KDPFR GNNILVMCD YTP GEPIPTNKR+ AAKI S+ DV  EEPWYGIEQEYTLLQKD+ WPL                   ADK++GRDIVDSHYKACL+ G+NISGINGEVMPGQWEFQVGP VGISAG
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARHLPGPVTHPSKLPKWNYDGSSTGQAPGEDSEVILYPQAILKDPFREGNNILVMCDCYTPRGEPIPTNKRYNAAKILSNPDVAKEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLFGGVNISGINGEVMPGQWEFQVGPTVGISAG 211          
The following BLAST results are available for this feature:
BLAST of FC925451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA3_MAIZE1.449e-9080.61Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA3_LUPAN2.471e-9078.57Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLN13_ARATH2.471e-9080.61Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA1_ALNGL9.389e-9080.10Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_SOYBN2.092e-8979.59Glutamine synthetase cytosolic isozyme 1 OS=Glycin... [more]
GLNA5_MAIZE2.732e-8977.55Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA1_MAIZE3.568e-8977.55Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLN12_ORYSJ6.086e-8978.46Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA_LACSA1.771e-8880.00Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA3_HORVU8.788e-8878.06Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI09FM1 TF Citrus clementina cDNA clone KN0AAP3YI09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925451 ID=FC925451; Name=FC925451; organism=Citrus clementina; type=EST; length=714bp
AGCACATTAACTTTCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTG
TTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATC
TCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTAC
ATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCT
TCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATG
GTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTAT
CCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGT
TATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAA
GACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAGAA
CCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAA
ATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCAT
ACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAGAC
TCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAA
TGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTG
GAATTTCTGCTGGA
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