FC925451

Overview
NameFC925451
Unique NameFC925451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:53..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.082e-85
Identity = 147/196 (75.00%), Postives = 162/196 (82.65%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T KIIAEYIWIGGSGMD+RSKARTLPGPVS+P+KLPKWNYDGSST QA G+DSEVILYPQAIFKDPFR+GNNILVMCDAY PAG+PIPTN RH A KIF H +V AEEPW+GIEQEYTLL+KDVKWPL                   ADKA+GRDIVD+HYKACLY+G++I G NGEVMPGQWEFQ+ P VGI AG
Sbjct:   16 TKKIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIFDHPNVKAEEPWFGIEQEYTLLKKDVKWPLGWPLGGFPGPQGPYYCAVGADKAFGRDIVDAHYKACLYSGLSIGGANGEVMPGQWEFQISPTVGIGAG 211
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.551e-84
Identity = 144/196 (73.47%), Postives = 162/196 (82.65%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDK+IAEYIW+GG+GMD+RSKARTL GPV DPSKLPKWN+DGSSTGQA G+DSEVIL+PQAIF+DPFR+G NILVMCD Y P GEPIPTN R+ AA+IFSH DV AEEPWYGIEQEYTLLQK + WPL                   ADK++GRDIVD+HYKACL+AGINISGIN EVMPGQWEFQ+GP VG+SAG
Sbjct:   18 TDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGPVVGVSAG 213
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.699e-84
Identity = 149/196 (76.02%), Postives = 162/196 (82.65%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            T KIIAEYIW+GGSGMD+RSKARTL GPV DPSKLPKWN+DGSSTGQAPG+DSEVIL P+AIF+DPFR+G NILVMCD Y P GEPIP+NKRH AAKIFSH DV AEEPW+GIEQEYTLLQKD KWPL                   ADK++GRDIVD  YKACLYAGI+ISGINGEVMPGQWEFQV PAVG+SAG
Sbjct:   16 TGKIIAEYIWVGGSGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQAPGDDSEVILCPRAIFRDPFRKGQNILVMCDCYEPNGEPIPSNKRHGAAKIFSHPDVKAEEPWFGIEQEYTLLQKDTKWPL-GWPLAYPGPQGPYYCAAGADKSYGRDIVDCAYKACLYAGIDISGINGEVMPGQWEFQVAPAVGVSAG 210
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.240e-83
Identity = 147/196 (75.00%), Postives = 161/196 (82.14%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TD IIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTP GEPIPTNKRH AA+IFS+  V AE PWYGIEQEYTLLQ DVKWPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AG
Sbjct:   72 TDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAG 267
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 2.925e-83
Identity = 146/196 (74.49%), Postives = 163/196 (83.16%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TD IIAEYIWIGG+G+D+RSK+RT+  PVS PS++PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTPAGEPIPTNKRH AA+IFS+  V AE PWYGIEQEYTLLQ +VKWPL                   ADK++GRDI D+HYKAC+YAGINISG NGEVMPGQWE+QVGP+VGI AG
Sbjct:   74 TDSIIAEYIWIGGTGIDVRSKSRTISKPVSHPSEVPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVVCDAYTPAGEPIPTNKRHRAAEIFSNPKVEAEIPWYGIEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWEYQVGPSVGIEAG 269
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.925e-83
Identity = 143/196 (72.96%), Postives = 163/196 (83.16%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDKIIAEYIW+GG+G+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILVMCD YTPAGEPIPTNKR+ AA++FS   VV++ PW+GIEQEYTLLQ+DV WPL                   +DK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AG
Sbjct:   72 TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAG 267
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 6.517e-83
Identity = 144/196 (73.47%), Postives = 163/196 (83.16%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDKIIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CDAYTPAGEPIPTNKRH AA++FS+  V+AE PW+GIEQEYTLLQ +V WPL                   ADK++GRDI D+HYKACL+AGINISG NGEVMPGQWE+QVGP+VGI AG
Sbjct:   73 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEVFSNPRVIAEVPWFGIEQEYTLLQTNVNWPLGWPVGGYPGPQGPYYCSAGADKSFGRDISDAHYKACLFAGINISGTNGEVMPGQWEYQVGPSVGIEAG 268
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.112e-82
Identity = 144/196 (73.47%), Postives = 161/196 (82.14%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            +D+IIAEYIWIGGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD +TPAGEPIPTNKR  AA+IFS+  V  E PW+GIEQEYTLLQ++VKWPL                   ADK WGRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VGI AG
Sbjct:   74 SDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIDAG 269
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.452e-82
Identity = 142/196 (72.45%), Postives = 160/196 (81.63%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDK+IAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNN+LV+CD YTP GEP+PTNKRH AA+IFS   V  + PW+GIEQEYTLLQKDV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AG
Sbjct:   67 TDKVIAEYIWVGGSGIDIRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNVLVICDTYTPQGEPLPTNKRHRAAQIFSDPKVGEQVPWFGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAG 262
[Close]
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.452e-82
Identity = 145/196 (73.98%), Postives = 160/196 (81.63%), Query Frame = 1 
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TD+IIAEYIWIGGSG+D+RSK+RTL  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD YTPAGEPIPTNKR  AA+IFS+  V  E PW+GIEQEYTLLQ +V WPL                   A+K+WGRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VGI AG
Sbjct:   72 TDRIIAEYIWIGGSGIDLRSKSRTLEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTYTPAGEPIPTNKRARAAEIFSNKKVNEEIPWFGIEQEYTLLQPNVNWPLGWPVGAYPGPQGPYYCGVGAEKSWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAG 267
The following BLAST results are available for this feature:
BLAST of FC925451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLN15_ARATH4.082e-8575.00Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLN13_ORYSJ1.551e-8473.47Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLNA2_MAIZE7.699e-8476.02Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLNA2_MEDSA2.240e-8375.00Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_PEA2.925e-8374.49Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ORYSJ2.925e-8372.96Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA4_PHAVU6.517e-8373.47Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ARATH1.112e-8273.47Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNAC_MAIZE1.452e-8272.45Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNAC_BRANA1.452e-8273.98Glutamine synthetase, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI09FM1 TF Citrus clementina cDNA clone KN0AAP3YI09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925451 ID=FC925451; Name=FC925451; organism=Citrus clementina; type=EST; length=714bp
AGCACATTAACTTTCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTG
TTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATC
TCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTAC
ATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCT
TCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATG
GTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTAT
CCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGT
TATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAA
GACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAGAA
CCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAA
ATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCAT
ACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAGAC
TCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAA
TGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTG
GAATTTCTGCTGGA
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