FC925451

Overview
NameFC925451
Unique NameFC925451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:53..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.896e-82
Identity = 143/196 (72.96%), Postives = 161/196 (82.14%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDKIIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH AA+IFS + V+ E PW+GIEQEYTL+Q+DV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWEFQVGP+VGI AG
Sbjct:   76 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHKAAQIFSDAKVLGEVPWFGIEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAG 271          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 4.224e-82
Identity = 141/196 (71.94%), Postives = 160/196 (81.63%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDKIIAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH AA+IFS   V ++ PW+GIEQEYTL+Q+DV WPL                   +DK++GRDI D+HYKACLYAGI ISG NGEVMPGQWE+QVGP+VGI AG
Sbjct:   78 TDKIIAEYIWVGGSGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIFSDPKVTSQVPWFGIEQEYTLMQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAG 273          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.517e-82
Identity = 148/196 (75.51%), Postives = 160/196 (81.63%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            TDK IAEYIWI   G  +RSKARTL GPV DP+KLPKWN+DGSSTGQ PG+DSEVI+YPQAIFKDPFRRGN+ILVMCD YTPAGEPIPTNKR  AAKIFSH DV AE PW+GIEQEYTLL+K+V  P+                   ADKA+GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG
Sbjct:   16 TDKFIAEYIWIDAVG-GLRSKARTLSGPVDDPTKLPKWNFDGSSTGQGPGDDSEVIIYPQAIFKDPFRRGNHILVMCDTYTPAGEPIPTNKRCNAAKIFSHPDVAAEVPWFGIEQEYTLLKKEVNCPIGCPTGGYPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.605e-81
Identity = 145/195 (74.36%), Postives = 159/195 (81.54%), Query Frame = 1
Query:  127 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            T+K+IAEYIWIGGSGMDMRSKAR+L GPVS   +LPKWNYDGSSTGQA G DSEVILYPQAIF+DPFRRG +ILV+CDAY+P G  IP+NKR AAAKIF+   V  EE WYG+EQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLY+GINISGINGEVMPGQWEFQVGP+VGISA
Sbjct:   17 TEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIFNEKAVSDEETWYGLEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISA 211          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.048e-56
Identity = 111/204 (54.41%), Postives = 131/204 (64.22%), Query Frame = 1
Query:  133 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTP----------AGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            KI AEY+WIGGS  D+RSK+RTL    + P  LP WNYDGSSTGQAPG DSEV L P++IFKDPFR G+NILVMCD Y P          A +PIPTN R A A++   +    EEPW+GIEQEYTLL    KWPL                   A  A GRD+ + HY+ CL AG+NISG+N EV+P QWE+QVGP  GI+ G
Sbjct:   37 KICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEVMEKAK--KEEPWFGIEQEYTLLNAITKWPLGWPKGGYPAPQGPYYCSAGAGVAIGRDVAEVHYRLCLAAGVNISGVNAEVLPSQWEYQVGPCEGITMG 238          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 1.015e-51
Identity = 104/191 (54.45%), Postives = 120/191 (62.83%), Query Frame = 1
Query:  142 AEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            A Y+WI G+G D+R K RTL      P +LP WNYDGSS  QA G +S+  LYP AI+KDPFRRGNNILVMCD Y   G P  TNKR    ++   +   AEEPW+GIEQEYT L  D   PL                   A+K + RDIVD+HY+ACLYAGI +SG N EVMP QWEFQVGP  GIS G
Sbjct:   34 ATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNNILVMCDTYKFDGTPTDTNKRKTCLEV--ANKCAAEEPWFGIEQEYTFLDFD-GHPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTNAEVMPAQWEFQVGPCEGISIG 221          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.157e-49
Identity = 100/198 (50.51%), Postives = 127/198 (64.14%), Query Frame = 1
Query:  133 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLL---QKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            K+IAEY+W+ G+G ++RSKARTL   ++   +LP+WN+DGSST QAPG DS++ L P A + DPFRRG+NI V+ + +   G P   N RH A K+F +H D   EE W+GIEQEYTL         WP                    A K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS G
Sbjct:   23 KVIAEYVWVDGTG-NLRSKARTLNKVITSIEQLPEWNFDGSSTNQAPGYDSDIYLKPVAFYPDPFRRGDNITVLAECFNSDGTPNKFNHRHEANKLFQAHKD---EEIWFGIEQEYTLFDMYDNVYAWP----KGGYPAPQGPYYCGVGAGKVYARDVIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMG 212          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.157e-49
Identity = 100/195 (51.28%), Postives = 122/195 (62.56%), Query Frame = 1
Query:  130 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            DKI AEY+WI G G  +R K  T+   V+D  +L  W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + Y   G P  TN RH A K+F   +    EPW+G+EQEYTL   D + P                      K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS G
Sbjct:   20 DKIQAEYVWIDGDG-GLRCKTTTVSKKVTDIGQLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNNDGTPNRTNHRHHAKKVF--DEAKEHEPWFGLEQEYTLFDADDQ-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMG 210          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 5.212e-48
Identity = 100/198 (50.51%), Postives = 128/198 (64.65%), Query Frame = 1
Query:  133 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTL--LQKDV-KWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            +IIAEY+WI G+G ++RSK RTL   ++   +LP+WN+DGSST QAPG DS++ L P A + DPFRRG+NI+V+   Y   G P   N RH AAK+F +H D   EE W+G+EQEYTL  +  DV  WP                    A K + RD++++HY+ACLYAG+ ISGIN EVMP QWEFQVGP  GI  G
Sbjct:   23 RIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHKD---EEIWFGLEQEYTLFDMYDDVYGWP----KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMG 212          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.212e-48
Identity = 98/195 (50.26%), Postives = 121/195 (62.05%), Query Frame = 1
Query:  130 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            DKI AEY+W+ G G  +RSK  T+   V+D   L  W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + Y   G P  TN RH AAK+   +    + PW+G+EQEYTL   D   P                      K + RD++++HY+ACLY+GINISGIN EVMP QWEFQVGP  GIS G
Sbjct:   20 DKIQAEYVWVDGDG-GLRSKTTTVSKKVTDIGSLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNSDGTPNRTNFRHHAAKVMEQAK--EDVPWFGLEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYSGINISGINAEVMPSQWEFQVGPCEGISMG 210          
The following BLAST results are available for this feature:
BLAST of FC925451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_DAUCA1.896e-8272.96Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_HORVU4.224e-8271.94Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA1_DAUCA5.517e-8275.51Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNA_PINSY1.605e-8174.36Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_CHLRE1.048e-5654.41Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA2_DROME1.015e-5154.45Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_CANGA6.157e-4950.51Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_AGABI6.157e-4951.28Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_YEAST5.212e-4850.51Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_HEBCY5.212e-4850.26Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YI09FM1 TF Citrus clementina cDNA clone KN0AAP3YI09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925451 ID=FC925451; Name=FC925451; organism=Citrus clementina; type=EST; length=714bp
AGCACATTAACTTTCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTG
TTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATC
TCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTAC
ATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCT
TCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATG
GTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTAT
CCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGT
TATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAA
GACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAGAA
CCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAA
ATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCAT
ACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAGAC
TCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAA
TGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTG
GAATTTCTGCTGGA
back to top