FC925451

Overview
NameFC925451
Unique NameFC925451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.017e-43
Identity = 91/194 (46.91%), Postives = 119/194 (61.34%), Query Frame = 1
Query:  136 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKD---VKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGIS 708
            ++AEYIWI     ++RSK +TL    +    LP+WN+DGSST QAPG DS++ L P AI+ DPFRRG+NI+V+ + +   G P   N RH  AK+ S  +   E  W+GIEQEYT+  +    V WP                      K + RD+V++HY+ACLY+GINISGIN EVMP QWE+QVGP  GIS
Sbjct:   15 VLAEYIWIDAH-FNIRSKCKTLDKKPTSIEDLPEWNFDGSSTDQAPGHDSDIYLRPAAIYPDPFRRGDNIIVLAECWNNDGTPNKFNHRHECAKLMSAHE--KEVIWFGIEQEYTMFDESDNPVGWP----KGGFPAPQGPYYCGVGTGKVFARDVVEAHYRACLYSGINISGINAEVMPSQWEYQVGPCEGIS 201          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.329e-43
Identity = 93/195 (47.69%), Postives = 118/195 (60.51%), Query Frame = 1
Query:  133 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAE-EPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            +I+AEY+W+  +G + RSK+RTLP        LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+    D  AE EPW+G+EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP +GI  G
Sbjct:   25 QIMAEYVWVDAAG-ETRSKSRTLPEKDYKAEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNAGGTPNKFNFRHDCVKVM---DTYAEDEPWFGLEQEYTLLGPDNR-PYGWPTGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCLGIEMG 214          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.329e-43
Identity = 89/196 (45.41%), Postives = 122/196 (62.24%), Query Frame = 1
Query:  130 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH+  +I    D+V+ + PW+G+EQEYTL+  D   P                    ADKA+GRDIV++HY+ACLYAG+ I+G N EVMP QWEFQ+GP  GI  G
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNRKPAETNLRHSCKRIM---DMVSNQHPWFGMEQEYTLMGTD-GHPFGWPSNGFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRMG 215          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.735e-43
Identity = 94/197 (47.72%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  133 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            ++ AEYIWI   G  +RSK  TL    S  + L +WN+DGSST QAP ++S+V L P AIFKDPFR G NILV+C+ Y   G P  +N R    K+   +     EPW+G+EQEYTL   D +   WP                    A K + RD +++HY+ACLYAGI ISGIN EVMP QWEFQVGP  GI  G
Sbjct:   24 RVQAEYIWIDAEG-GIRSKTMTLDKAPSSVADLKEWNFDGSSTNQAPADNSDVFLRPVAIFKDPFRGGANILVLCECYDNDGTPNKSNYRAHCKKVMDAAK--DTEPWFGLEQEYTLFDADGQVFGWP----KNGFPGPQGPYYCGVGAGKVFARDFIEAHYRACLYAGIKISGINAEVMPSQWEFQVGPCTGIEMG 213          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.272e-42
Identity = 91/194 (46.91%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  136 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            I+AEY+W+   G   RSK+RTLP     P  LP WN+DGSST QAPG++S+V L P A++ DPFR   NI+V+ + +   G P   N RH   K+  +++D   +EP +G+EQEYTLL  D + P                      K   RDIV++HYKACLYAGI ISG N EVMP QWE+QVGP  GI+ G
Sbjct:   24 IMAEYVWVDADG-GTRSKSRTLPEKEYKPEDLPVWNFDGSSTNQAPGDNSDVYLRPCAVYPDPFRGSPNIIVLAECWNADGTPNKYNFRHDCVKVMDTYAD---DEPLFGLEQEYTLLGSDNR-PYGWPAGGFPAPQGEYYCGVGTGKVVQRDIVEAHYKACLYAGIQISGTNAEVMPAQWEYQVGPCTGIAMG 212          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.521e-42
Identity = 90/197 (45.69%), Postives = 118/197 (59.90%), Query Frame = 1
Query:  133 KIIAEYIWIGGSGMDMRSKART---LPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            KI A Y+WI G+G ++RSK RT   LP  + D    P WNYDGSSTGQA G DS+  L P A + DPF  G N LVMCD      +P  T+ R A A+I    ++    PW+G+EQEY ++ +D + PL                   AD+A+GR++V++HY+ACL+AG+NI G N EV PGQWEFQ+G   GI  G
Sbjct:   29 KIQATYVWIDGTGENLRSKTRTFDKLPKRIED---YPIWNYDGSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIM--HEIRDTRPWFGMEQEYLIVDRD-EHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMG 219          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.243e-41
Identity = 94/195 (48.21%), Postives = 115/195 (58.97%), Query Frame = 1
Query:  139 IAEYIWIGGSGMDMRSKARTLPGPVSDPSKL---PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            I EY+WIGG+G ++RSK R L   +    KL   P WNYDGSST QA G  SEV LYP+ I++ PFRR  N ++V+CD Y   G P+ TN RH A  IF       E+PWYG+EQEY + +KD   P+                   +  A+GR I D H +ACLYAGI ISG N EV PGQ EFQ+GP  GI A
Sbjct:   20 IIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIFEKYQ--NEKPWYGLEQEYFIFRKDTNQPIGMEYASKQGQYYCSVG---SQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPVEGIDA 208          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.243e-41
Identity = 92/196 (46.94%), Postives = 123/196 (62.76%), Query Frame = 1
Query:  130 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG-NNILVMCDAYTPAGEPIPTNKRHA-AAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 711
            +++ A Y+WI G+G ++R K R L    S    LP W YDGSST QA GE+S+  L P+AI++DPF+ G N+++V+CD Y+  G+P  +NKR A  A I   SD   +EPW+GIEQEYTLL  D + P                    AD+ + RD+V++H  ACLYAGI+ +G N EVMP QWEFQ+GPA GI A
Sbjct:   60 NRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDGSSTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNKRAAFQAAIDLISD---QEPWFGIEQEYTLLDVDGR-PFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQIGPA-GIKA 250          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.345e-40
Identity = 88/195 (45.13%), Postives = 110/195 (56.41%), Query Frame = 1
Query:  130 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            +K+   Y+WI G+G  +R K RTL        ++P+WN+DGSST QA G +S++ L P  +F+DPF    N LVMC+      +   TN RH   KI     V    PW+G+EQEYTLL  +   P                    ADK +GRD+V+SHYKACLYAGI I G N EVMP QWEFQVGP  GI  G
Sbjct:   24 EKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKIMEM--VNDHRPWFGMEQEYTLLGIN-GHPYGWPENGFPGPQGPYYCGVGADKVYGRDVVESHYKACLYAGIKICGTNAEVMPSQWEFQVGPCEGIDMG 215          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 161.384 bits (407), Expect = 4.423e-39
Identity = 84/196 (42.86%), Postives = 116/196 (59.18%), Query Frame = 1
Query:  130 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVA-EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+   +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I    D+V+ + PW+G+EQEYTLL  D   P                    ADKA+ RDI+++HY+ACLYAG+ I+G   EV   QWEFQ+GP  GI  G
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSESSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNQKPAETNLRHTCKRIM---DMVSNQHPWFGMEQEYTLLGTD-GHPFGWPSDGFPGPQGLYYCGVGADKAYRRDIMEAHYRACLYAGVKITGTYAEVKHAQWEFQIGPCEGIRMG 215          
The following BLAST results are available for this feature:
BLAST of FC925451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_YARLI1.017e-4346.91Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_FUSSH1.329e-4347.69Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_ACOCA1.329e-4345.41Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_CRYNE1.735e-4347.72Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_GIBFU3.272e-4246.91Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_CAEEL9.521e-4245.69Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_MIMIV1.243e-4148.21Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA1_DROME1.243e-4146.94Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_XENLA2.345e-4045.13Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_CRIGR4.423e-3942.86Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YI09FM1 TF Citrus clementina cDNA clone KN0AAP3YI09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925451 ID=FC925451; Name=FC925451; organism=Citrus clementina; type=EST; length=714bp
AGCACATTAACTTTCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTG
TTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATC
TCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTAC
ATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCT
TCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATG
GTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTAT
CCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGT
TATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAA
GACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAGAA
CCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAA
ATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCAT
ACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAGAC
TCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAA
TGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTG
GAATTTCTGCTGGA
back to top