FC925451

Overview
NameFC925451
Unique NameFC925451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 83/201 (41.29%), Postives = 113/201 (56.22%), Query Frame = 1
Query:  142 AEYIWIGGS------GM---DMRSKARTLPGPVS-DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            AEYIW  G+      GM   +MRSK +    P+  D S+ P W++DGSSTGQA G +S+ IL P  +  DP R   ++LVMC+ + P G+P  TN R    +I     V AE+ WYG EQEYT+L K                         A+ A+GR + ++H +AC+ AG+ ISGIN EVMPGQWE+Q+GP   ++ G
Sbjct:   37 AEYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCILRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIID-DKVTAEDCWYGFEQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALG 236          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 80/186 (43.01%), Postives = 104/186 (55.91%), Query Frame = 1
Query:  142 AEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGP 693
            AEYIWI G+     +RSK + + G  +    LP W +DGSST QA G  S+ +L P     DP R G++ILV+C+       P  +N R A A++       A+EP +GIEQEYT  Q    +PL                   AD+ +GRD+V++H   CL AG+ ISGIN EVMPGQWEFQVGP
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEVAER--FAAQEPIFGIEQEYTFFQDG--YPLGFPKGGFPAPQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGP 186          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.684e-30
Identity = 80/188 (42.55%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  136 IIAEYIWIGGSG--MDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPL-XXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVG 690
            I AEYIWI G+     +RSK + L    SD S+LP+W +DGSST QA G  S+++L P     DP R G+++LV+C+       P P+N R     +        +EP +GIEQEYT L+ D   PL                    AD  +GR+IV+ H   CL AG+ +SGIN EVMPGQWEFQVG
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKTKIL----SDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPVAER--FAGQEPIFGIEQEYTFLKGD--RPLGFPEGGGYPAPQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVG 182          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 79/196 (40.31%), Postives = 102/196 (52.04%), Query Frame = 1
Query:  142 AEYIWIGGSGMD--MRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFS-HSDVVAEEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVG----PAVG 702
            AEYIWI G+  +  MRSK R     + D  +   W +DGSST QAPG +S+ +L P     DP R G+N LV+C+       P PTN R AA  +   ++D+    P +GIEQEYT  +  +   WP                      K  GR IV+ H +ACL AG+ I G N EVM GQWEFQ+G    PA+G
Sbjct:    5 AEYIWIDGTEPEPLMRSKTRI----IKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNTRAAALGVAERYADM---SPMFGIEQEYTFFKDGRPYGWP----EVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIG 188          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  442 AEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAG 714
            A+EPW+GIEQEYTLL    KWPL                   A ++ GRDI + HY+ CL+AGI ISG+NGEV+P QWE+QVGP  GI+ G
Sbjct:    2 AQEPWFGIEQEYTLLNSVTKWPLGWPKGGYPAGQGPYYCSVGAGRSIGRDIPEVHYRCCLHAGIQISGVNGEVLPSQWEYQVGPVEGIAMG 92          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 69/187 (36.90%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  145 EYIWIGGSGMDMRSKART-LPGPVSDPS--KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQV 687
            EYIW+ G       + +T +    S P+  +LP W +DGSST QA G  S+ +L P A+F D  R  N +LVMC+   P G+ P  +NKR   A I   +       W+G EQEY   +  + + +P                     D A  R IV+ H   CL AGIN  GIN EV  GQWEFQ+
Sbjct:    7 EYIWLDGYTPTPNLRGKTQIKEFASFPTLEQLPLWGFDGSSTQQAEGHSSDCVLKPVAVFPDAART-NGVLVMCEVMMPDGKTPHASNKR---ATILDDAGA-----WFGFEQEYFFYKDGRPLGFPTSGYPAPQGPYYTGVGFSNVGDVA--RKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQI 182          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 68/189 (35.98%), Postives = 86/189 (45.50%), Query Frame = 1
Query:  133 KIIAEYIWIGGSGMDMRSKARTLPGPVSD---PSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKA-WGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQV 687
            K   EYIW+ G       + +T      +     +LP W +DGSST QA G  S+ +L P AI+ DP  R N  LVMC+   P G    +N R   A I        E+ W+G EQEY   Q     PL                   ++     R+IV+ H   CL AGIN  GIN EV  GQWEFQ+
Sbjct:    3 KFKLEYIWLDGYTPVPNLRGKTQIKEFDEFPTLEQLPLWGFDGSSTMQAEG-SSDCVLKPVAIYPDP-ARTNGALVMCEVMMPDGHAHASNAR---ATILDD-----EDAWFGFEQEYFFYQNG--RPLGFPEQGYPAPQPYYTGVGYSNVGDVAREIVEEHLDLCLAAGINHEGINAEVAKGQWEFQI 179          
BLAST of FC925451 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 66/192 (34.38%), Postives = 83/192 (43.23%), Query Frame = 1
Query:  145 EYIWIGGSGMDMRSKARTLPGPVSDPS--------KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKIFSHSDVVAEEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQV 687
            EYIW+     D     +TL G              +LP W +DGSST QA G  S+ +L P  ++ DP R  N  LVMC+   P  E P  +N R              E  W+G EQEY   +  + + +P                     D A  R IV+ H   CL AGIN  GIN EV  GQWEFQ+
Sbjct:    7 EYIWL-----DATRPYQTLRGKTQIKEFDAFPTLEQLPLWGFDGSSTLQAEGRTSDCVLKPVTVYPDPVRT-NGALVMCEVMMPDAETPHASNTRATVLD--------DEGAWFGFEQEYFFYKNGRPLGFPEQGYPAPQGPYYTGVGYKNVGDVA--RQIVEEHLDICLAAGINHEGINAEVAKGQWEFQI 182          
The following BLAST results are available for this feature:
BLAST of FC925451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_CHLRE1.573e-3641.29Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA2_STRVR2.126e-3343.01Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY1.684e-3042.55Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL3.287e-2640.31Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA_DUNSA1.094e-2151.65Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA2_BRAJA6.005e-2036.90Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP3.295e-1835.98Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME1.635e-1734.38Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YI09FM1 TF Citrus clementina cDNA clone KN0AAP3YI09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925451 ID=FC925451; Name=FC925451; organism=Citrus clementina; type=EST; length=714bp
AGCACATTAACTTTCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTG
TTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATC
TCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTAC
ATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCT
TCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATG
GTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATCCTCTAT
CCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATATTCTTGT
TATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAA
GACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAGAA
CCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAA
ATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCAT
ACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAGAC
TCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAA
TGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTG
GAATTTCTGCTGGA
back to top