FC925457

Overview
NameFC925457
Unique NameFC925457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_ASHGO (H/ACA ribonucleoprotein complex subunit 3 OS=Ashbya gossypii GN=NOP10 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLP 214
            M+L + +  +G +VYT +K +P+G   +SAHPARFSPDDKYSRQRV LK+RF +LP
Sbjct:    1 MHLMYTLGPDGKRVYTLEKVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDMLP 56          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_TRYCR (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKPP 229
            M+LQ YI  NG + YT KK  P G P  SAHPARFSPDDKYSR R+ +K+RF  L ++K P
Sbjct:    1 MHLQVYIV-NGKRQYTLKKMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKALKSEKRP 60          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_CANGA (H/ACA ribonucleoprotein complex subunit 3 OS=Candida glabrata GN=NOP10 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLP 214
            M+L + +++ G +VYT KK +  G   +SAHPARFSPDDKYSRQRV LKKR+ LLP
Sbjct:    1 MHLMYTLDNEGKRVYTLKKMTEEGEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56          
BLAST of FC925457 vs. ExPASy Swiss-Prot
Match: NOP10_KLULA (H/ACA ribonucleoprotein complex subunit 3 OS=Kluyveromyces lactis GN=NOP10 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.127e-12
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 2
Query:   47 MYLQFYINDNGDKVYTTKKESPTGMPAQSAHPARFSPDDKYSRQRVLLKKRFGLLP 214
            M+L + ++  G ++YT KK +      +SAHPARFSPDDKYSRQRV LKKR+ LLP
Sbjct:    1 MHLMYTLDAQGKRIYTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56          
The following BLAST results are available for this feature:
BLAST of FC925457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NOP10_ASHGO2.719e-1358.93H/ACA ribonucleoprotein complex subunit 3 OS=Ashby... [more]
NOP10_TRYCR3.551e-1359.02H/ACA ribonucleoprotein complex subunit 3-like pro... [more]
NOP10_CANGA3.551e-1360.71H/ACA ribonucleoprotein complex subunit 3 OS=Candi... [more]
NOP10_KLULA5.127e-1257.14H/ACA ribonucleoprotein complex subunit 3 OS=Kluyv... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ23FM1 TF Citrus clementina cDNA clone KN0AAP8YJ23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925457 ID=FC925457; Name=FC925457; organism=Citrus clementina; type=EST; length=344bp
GCCTTCAGCCGTTTTTAAAAGACGAAAGGCTTAGCGAGCGATTAAGATGT
ATCTTCAGTTCTACATTAACGATAATGGCGATAAAGTTTACACCACTAAG
AAAGAGTCGCCAACGGGAATGCCTGCTCAATCTGCTCATCCAGCTCGCTT
TTCTCCTGACGACAAATACTCAAGGCAAAGAGTCCTTCTGAAGAAGCGCT
TCGGTCTTCTGCCAACACAGAAACCTCCTCCGAAGTACTGAAATGTTTTA
AAGGCTTAGATTATTGGTGTATCATTTCAAGCTTCTTCCAAATTGGAGGT
TCCAATCTTCCAATATTTATCATCGTGAGATTGTGTAATGTTAC
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