FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9597 contig Ccv1_Contig9597:117..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.706e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  D+RSSI DA+AGIAL+   VKLVSWYDNEWGY +RVVDLIV M+KTQ
Sbjct:  287 TDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.841e-15
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  DSRSSI DA+AGIAL+  F+KLVSWYDNEWGY  RVVDLI  M KTQ
Sbjct:  286 TDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 4.841e-15
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  DSRSSI DA+AGIAL+  FVKLVSWYDNEWGY  RVVDLI  M KTQ
Sbjct:  286 TDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.322e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMA 148
            +DF  DSRSSI DA+AGIALSKKFVK+V+WYDNEWGY +RVVDLI  MA
Sbjct:  286 SDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMA 334          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.257e-15
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKT 154
            TDF  DSRSSI DA+AGIAL+  FVKLVSWYDNEWGY +RV+DLIV M  T
Sbjct:  289 TDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  D+RSSI DA+AGI+L+  FVKLVSWYDNEWGY TRVVDLI+ ++K Q
Sbjct:  286 TDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHISKCQ 337          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  DSRSSI DA+AGIAL+  FVKLVSWYDNEWGY TRVVDLI  M  T+
Sbjct:  254 TDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKT 154
            TDF  D+RSSI DA+AGIAL+  F+KLVSWYDNEWGY TRVVDLI  + KT
Sbjct:  286 TDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKTQ 157
            TDF  DSRSSI DA+AGIAL+  FVKLVSWYDNEWGY TRVVDLI  M  T+
Sbjct:  286 TDFQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVDLIRHMNSTK 337          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.402e-14
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            TDF  D+RSSI DA+AGIAL+ KFVKLVSWYDNE GY TRVVDLIV +AK
Sbjct:  287 TDFIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIAK 336          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3PC_RANAC3.706e-1575.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE4.841e-1575.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE4.841e-1576.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL6.322e-1577.55Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA8.257e-1574.51Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR1.078e-1471.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU1.078e-1475.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.078e-1472.55Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE1.408e-1475.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA2.402e-1478.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
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