FC925461

Overview
NameFC925461
Unique NameFC925461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length457
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9597 contig Ccv1_Contig9597:117..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  D+ SSI DA+AGIAL+  FVKL+SWYDNE+GY  RVVDL+
Sbjct:  343 TDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLV 387          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  D+ SS+ DA+AGI+L+ KFVKL+SWYDNE+GY  RV+DLI
Sbjct:  281 TDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLI 325          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  D+ SS+ DA+AGI+L+ KFVKL+SWYDNE+GY  RV+DLI
Sbjct:  281 TDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLI 325          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMA 148
            DF  D RSSI DA AGI L+  F K+VSWYDNEWGY  RV+DL++ MA
Sbjct:  286 DFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMA 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAKT 154
            +DF  D+ SSI+DA AGI L+  FVKLVSWYDNE+GY TRVVDL+  +AK+
Sbjct:  282 SDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  DS SSI DA+AGIAL+  FVKL+SWYDNE+GY  RVVDL+
Sbjct:  357 TDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLL 401          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +DF  D+ +SI DA AGI LS KFVKL+SWYDNE+GY  RVVDLI  +AK
Sbjct:  282 SDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLI 136
            TDF  D+ SS+ DA+AGI+L+ KFVKL+SWYDNE+GY  RV+DLI
Sbjct:  281 TDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLI 325          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 2
Query:    5 DFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            DF  +S SSI DA AGI+L+  FVKLVSWYDNEWGY  R +DL+V MA+
Sbjct:  285 DFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQ 333          
BLAST of FC925461 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 TDFALDSRSSILDAQAGIALSKKFVKLVSWYDNEWGYRTRVVDLIVPMAK 151
            +D   D  SSI DA+AGIAL+  FVKLVSWYDNEWGY  RV+DLI  +A+
Sbjct:  284 SDLNGDPHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVIDLIAYIAQ 333          
The following BLAST results are available for this feature:
BLAST of FC925461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
G3PT_BOVIN1.116e-1168.89Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_DROPS1.116e-1166.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME1.116e-1166.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P1_SYNY31.116e-1164.58Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_ZYGRO1.457e-1164.71Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3PT_MACFA1.457e-1171.11Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_YEAST1.457e-1166.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_DROME1.457e-1166.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_USTMA1.904e-1165.31Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_MONAN1.904e-1164.00Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE23FM1 TF Citrus clementina cDNA clone KN0AAP11YE23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925461 ID=FC925461; Name=FC925461; organism=Citrus clementina; type=EST; length=457bp
CACCGACTTTGCTCTTGACAGTAGGTCCAGTATCCTTGATGCCCAGGCTG
GTATTGCTTTGAGTAAGAAATTTGTGAAGCTTGTCTCCTGGTATGACAAT
GAGTGGGGCTACCGTACTCGTGTGGTGGATTTGATTGTCCCCATGGCGAA
GACCCAGTAACTTACCTCGCGTGGCTTGAGTATGTAACACGCTTAGTTGT
GCTAAGTGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCCCTAAA
TGTGGTGTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTT
TCCAAGACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGA
TTTTCCCTTGTAGTATGCAAGAAGAGTTGGTGAACCCACTTATGTTTTGT
TAGCGAGAAAACAATTGTCTATTGGAAACTTGCTTTTATAAAAAAAAAAA
AAAAAAA
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