FC925464

Overview
NameFC925464
Unique NameFC925464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12850 contig Ccv1_Contig12850:31..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            R  KL++  ++L ++EE++ ++++ LK +   A+E+  ++  +   P+ +G   E +D+N AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ P   YADIGG+D Q QE+
Sbjct:   43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            R  KL++  ++L ++EE++ ++++ LK +   A+E+  ++  +   P+ +G   E +D+N AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ P   YADIGG+D Q QE+
Sbjct:   43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            R  KL++  ++L ++EE++ ++++ LK +   A+E+  ++  +   P+ +G   E +D+N AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ P   YADIGG+D Q QE+
Sbjct:   43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            R  KL++  ++L ++EE++ ++++ LK +   A+E+  ++  +   P+ +G   E +D+N AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ P   YADIGG+D Q QE+
Sbjct:   43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 48/144 (33.33%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  231 SKCKLRLL-KLERI-KDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            SK K  L+ K+ ++ KD LL+E E    + RL   + + +  R +++  R  P+ +  + E++D++   V S+ GP + +    F+D+ QLEPG  + ++ +  S+V +L  E DP+V+ M+VE+ P  SY  IGGL+ Q++E+
Sbjct:   27 SKTKRNLMWKIRKLEKDKLLIENE----RTRL---DREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREV 163          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 50/167 (29.94%), Postives = 93/167 (55.69%), Query Frame = 3
Query:  192 PEAAARLPTVTPLSKCK-----------LRLLKLERIKDYLLMEEEFVTNQ-ERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            P+ A +LP   P +               RL  L+R  +++ ++EE+V ++ + L+ +  +A+E+  ++  +   P+ +G   E+ID+N+AIV S+ G  YYV ILS ++++ L+P  ++ +     ++V +L  E D  +S++   + P  +Y DIGG D Q QEI
Sbjct:    9 PKPAEKLPATRPETSITDVPSDGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSV---PLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEI 172          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 42/138 (30.43%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            R  KL++  ++L ++EE++ ++++ LK +   A+E+  ++  +   P+ +G   E +D+N AIV+S+ G  YYV ++S +D++ L+P  ++ +H    ++V +L    D  + ++  ++ P   YADIGG+D Q QE+
Sbjct:   43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  243 LRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            +R  ++ER    L + E +V  +     +EE+    R ++D ++  P+ +G   E ID + AIV S+ G  + V ILS VD++ L+P   + +H    ++VG+L  EVD  + VM   + P  +Y D+GGLD Q QEI
Sbjct:   11 VRYKQMERKLRLLEIREGYVRKEIETLKREER--HSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEI 146          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.923e-16
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  261 ERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            +RI+   L       ++ERL   E +    R ++  LR  P   G L EL+DE+ AIV +  GP + V I  +++++ L+PG  + +  + +++V LL  E DP V   +V + P  SY DIGGLD Q+QE+
Sbjct:   23 KRIRQLELQVRTLEADKERL---ERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQEL 151          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15
Identity = 46/134 (34.33%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  258 LERIKDYLLMEEEFVTNQ-ERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            LER  + L ++E F+    + LK +  +A+E+  ++  +   P+ +G   E ID+N AIV S+ G  Y V ILS +D++ L+P  ++ +     ++V +L  E D  +S+++ ++ P  SYAD+GGLD Q QE+
Sbjct:   16 LERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSV---PLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEV 146          
The following BLAST results are available for this feature:
BLAST of FC925464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PRS6B_RAT1.841e-1732.6126S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA1.841e-1732.6126S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.841e-1732.6126S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.841e-1732.6126S protease regulatory subunit 6B OS=Bos taurus G... [more]
PSMR_METTH4.102e-1733.33Proteasome-activating nucleotidase OS=Methanobacte... [more]
PRS6B_SOLTU1.559e-1629.9426S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_MOUSE3.472e-1630.4326S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_ENCCU3.472e-1634.7826S protease regulatory subunit 6B homolog OS=Ence... [more]
PSMR_THEON5.923e-1635.61Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS6B_SCHPO1.010e-1534.3326S protease regulatory subunit 6B homolog OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI17FM1 TF Citrus clementina cDNA clone KN0AAP3YI17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925464 ID=FC925464; Name=FC925464; organism=Citrus clementina; type=EST; length=658bp
CGCTTTTATTCTCTTACTTAATCGAATTCGAAATCTAGTGTGAAGCCATG
GGTCAGGGAACACCGGGAGGTCTGAACCGGCAAGGTCCAGGAGGTGACCG
CAAGGGAGATGGAGCGGATAAGAAAGATAAAAAATTCGAGCCTGCAGCTC
CTCCGGCCCGTGTGGGCCGCAAGCAACGAAAGCAGAAAGGACCAGAAGCG
GCGGCACGCCTTCCGACCGTTACGCCGCTGAGTAAGTGCAAGCTGAGGCT
TTTAAAGCTTGAGAGGATAAAAGATTATCTCTTGATGGAAGAGGAGTTTG
TTACGAATCAGGAGAGATTGAAGCCGCAGGAAGAGAAGGCGGAGGAAGAT
CGGTCAAAGGTTGACGATCTGAGAGGTTCGCCGATGAGCGTTGGTAATTT
GGAGGAGTTGATTGATGAGAATCACGCCATTGTTTCGTCGTCGGTGGGGC
CCGAGTATTACGTCGGGATTTTGTCCTTTGTTGATAAGGATCAGCTGGAG
CCTGGCTGTGCTATTTTGATGCACAATAAGGTCCTTTCGGTGGTTGGGCT
TCTGCAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGG
CTCCATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAG
GAGATTAA
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