FC925464
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17 Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 3 Query: 246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 R KL++ ++L ++EE++ ++++ LK + A+E+ ++ + P+ +G E +D+N AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++ P YADIGG+D Q QE+ Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17 Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 3 Query: 246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 R KL++ ++L ++EE++ ++++ LK + A+E+ ++ + P+ +G E +D+N AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++ P YADIGG+D Q QE+ Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17 Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 3 Query: 246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 R KL++ ++L ++EE++ ++++ LK + A+E+ ++ + P+ +G E +D+N AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++ P YADIGG+D Q QE+ Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17 Identity = 45/138 (32.61%), Postives = 85/138 (61.59%), Query Frame = 3 Query: 246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 R KL++ ++L ++EE++ ++++ LK + A+E+ ++ + P+ +G E +D+N AIV S+ G YYV ILS +D++ L+P ++ +H ++V +L E D + ++ ++ P YADIGG+D Q QE+ Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17 Identity = 48/144 (33.33%), Postives = 86/144 (59.72%), Query Frame = 3 Query: 231 SKCKLRLL-KLERI-KDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 SK K L+ K+ ++ KD LL+E E + RL + + + R +++ R P+ + + E++D++ V S+ GP + + F+D+ QLEPG + ++ + S+V +L E DP+V+ M+VE+ P SY IGGL+ Q++E+ Sbjct: 27 SKTKRNLMWKIRKLEKDKLLIENE----RTRL---DREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREV 163
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16 Identity = 50/167 (29.94%), Postives = 93/167 (55.69%), Query Frame = 3 Query: 192 PEAAARLPTVTPLSKCK-----------LRLLKLERIKDYLLMEEEFVTNQ-ERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 P+ A +LP P + RL L+R +++ ++EE+V ++ + L+ + +A+E+ ++ + P+ +G E+ID+N+AIV S+ G YYV ILS ++++ L+P ++ + ++V +L E D +S++ + P +Y DIGG D Q QEI Sbjct: 9 PKPAEKLPATRPETSITDVPSDGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSV---PLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEI 172
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16 Identity = 42/138 (30.43%), Postives = 85/138 (61.59%), Query Frame = 3 Query: 246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 R KL++ ++L ++EE++ ++++ LK + A+E+ ++ + P+ +G E +D+N AIV+S+ G YYV ++S +D++ L+P ++ +H ++V +L D + ++ ++ P YADIGG+D Q QE+ Sbjct: 43 RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEV 177
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16 Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 3 Query: 243 LRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 +R ++ER L + E +V + +EE+ R ++D ++ P+ +G E ID + AIV S+ G + V ILS VD++ L+P + +H ++VG+L EVD + VM + P +Y D+GGLD Q QEI Sbjct: 11 VRYKQMERKLRLLEIREGYVRKEIETLKREER--HSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEI 146
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.923e-16 Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 3 Query: 261 ERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 +RI+ L ++ERL E + R ++ LR P G L EL+DE+ AIV + GP + V I +++++ L+PG + + + +++V LL E DP V +V + P SY DIGGLD Q+QE+ Sbjct: 23 KRIRQLELQVRTLEADKERL---ERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQEL 151
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15 Identity = 46/134 (34.33%), Postives = 80/134 (59.70%), Query Frame = 3 Query: 258 LERIKDYLLMEEEFVTNQ-ERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656 LER + L ++E F+ + LK + +A+E+ ++ + P+ +G E ID+N AIV S+ G Y V ILS +D++ L+P ++ + ++V +L E D +S+++ ++ P SYAD+GGLD Q QE+ Sbjct: 16 LERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSV---PLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEV 146 The following BLAST results are available for this feature:
BLAST of FC925464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925464 ID=FC925464; Name=FC925464; organism=Citrus clementina; type=EST; length=658bpback to top |