FC925464

Overview
NameFC925464
Unique NameFC925464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  264 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            RI+   L       ++ERL   E +    RS++  LR  P   G + E++DE+ AIV +  GP + V I  ++D+ +L PG  + +  + ++VV +L    DP V   +V + P  +Y DIGGL  Q+QE+
Sbjct:   25 RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQEL 152          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 42/131 (32.06%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  264 RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            RI+   L       ++ERL   E +    RS++  LR  P   G++ E++D++ AIV +  GP + V I  ++DK +L PG  + +  + ++++ +L    DP V   +V + P  +Y DIGGL  Q+QE+
Sbjct:   22 RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQEL 149          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  309 QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            +E++  Q+E  E  ++++  L   P     + E+ID+N  +V SS GP   V + + VD   L+PG  + ++N+  ++V +L    DP+V  M+VE+ P   + D+GGL+ QI+EI
Sbjct:   37 KEKISLQKE-LEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREI 151          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  246 RLLKLERIKDYLLMEEEFVTNQ-ERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            ++  LE   D+  ++EE++  + + LK +   A+E+   V  +R  P+ +G L E++D N  IV S+ G    V ILS +D++ L+P  ++ +     ++V  L  E D  + ++  ++ P ESY+DIGG D Q QE+
Sbjct:   28 KMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEE---VKRIRSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEM 162          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 42/143 (29.37%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  228 LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            L++ + ++L+LE      L  ++      ++K + E  + +   +D LR  P+ +G + + ++E  A+V SS GP + V +  FV+ D + PG  + ++ + L+VV +L  E D     M++E+ P   + DIGGL+ QI++I
Sbjct:   27 LAELESKVLRLE------LKNKDITRENVQIKKENEILKRE---LDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDI 160          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  330 EEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            E +  + +S+ + LR  P+ +G + +++D N  IV SS GP + V     V+ D ++PG    ++ + L++V LL    D  V  M++  +P E Y DIGGL  QI E+
Sbjct:   82 EREVRKLKSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEV 190          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 41/142 (28.87%), Postives = 83/142 (58.45%), Query Frame = 3
Query:  246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            R+ +LE    +L  +   + +++R L+ Q+ K E +    +S++D ++ SP+ +G + ++I  +  IV SS GP++ V +  ++D+ +L PG  + ++   L++  ++    +P V+ M+V ++    Y  IGGLD QIQE+
Sbjct:   30 RVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQEL 171          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 41/142 (28.87%), Postives = 83/142 (58.45%), Query Frame = 3
Query:  246 RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEED----RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            R+ +LE    +L  +   + +++R L+ Q+ K E +    +S++D ++ SP+ +G + ++I  +  IV SS GP++ V +  ++D+ +L PG  + ++   L++  ++    +P V+ M+V ++    Y  IGGLD QIQE+
Sbjct:   30 RVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQEL 171          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  330 EEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            E +  + +S+++ L+  P+ VG + ++ID    +V SS GP + V +   V+   L+ G    ++ + L++V +L    D  V  M++  AP E+Y DIGGL+ QI EI
Sbjct:   57 EREVRKLKSEIEHLKTPPLIVGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEI 165          
BLAST of FC925464 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 43/152 (28.29%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  219 VTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDR------SKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEI 656
            ++  SK  L  +K    ++  L EE      E+   + +K + +R      S++D L+  P+ VG + +++     I+ SS GP++ V    F++  ++ PG  + ++ + L+V+ +L    DP V  M+V  +P   Y  IGGL+AQI E+
Sbjct:   20 LSDFSKYLLDRVKQLEERNVRLKEEYRKIELEKKSVENKKVQYEREIRKLTSELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINEL 171          
The following BLAST results are available for this feature:
BLAST of FC925464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PSMR_PYRHO2.107e-1333.59Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRFU2.107e-1332.06Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_AERPE2.107e-1333.62Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS6B_DICDI2.751e-1331.8826S protease regulatory subunit 6B homolog OS=Dict... [more]
PSMR_METVS4.693e-1329.37Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METB64.693e-1333.94Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METMA8.005e-1328.87Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METAC1.045e-1228.87Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METHJ2.329e-1233.03Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_UNCMA8.850e-1228.29Proteasome-activating nucleotidase OS=Uncultured m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI17FM1 TF Citrus clementina cDNA clone KN0AAP3YI17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925464 ID=FC925464; Name=FC925464; organism=Citrus clementina; type=EST; length=658bp
CGCTTTTATTCTCTTACTTAATCGAATTCGAAATCTAGTGTGAAGCCATG
GGTCAGGGAACACCGGGAGGTCTGAACCGGCAAGGTCCAGGAGGTGACCG
CAAGGGAGATGGAGCGGATAAGAAAGATAAAAAATTCGAGCCTGCAGCTC
CTCCGGCCCGTGTGGGCCGCAAGCAACGAAAGCAGAAAGGACCAGAAGCG
GCGGCACGCCTTCCGACCGTTACGCCGCTGAGTAAGTGCAAGCTGAGGCT
TTTAAAGCTTGAGAGGATAAAAGATTATCTCTTGATGGAAGAGGAGTTTG
TTACGAATCAGGAGAGATTGAAGCCGCAGGAAGAGAAGGCGGAGGAAGAT
CGGTCAAAGGTTGACGATCTGAGAGGTTCGCCGATGAGCGTTGGTAATTT
GGAGGAGTTGATTGATGAGAATCACGCCATTGTTTCGTCGTCGGTGGGGC
CCGAGTATTACGTCGGGATTTTGTCCTTTGTTGATAAGGATCAGCTGGAG
CCTGGCTGTGCTATTTTGATGCACAATAAGGTCCTTTCGGTGGTTGGGCT
TCTGCAAGATGAAGTAGATCCAATGGTGTCTGTGATGAAGGTTGAGAAGG
CTCCATTGGAGTCTTATGCTGATATTGGAGGTTTAGATGCACAGATACAG
GAGATTAA
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