FC925466

Overview
NameFC925466
Unique NameFC925466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1994 contig Ccv1_Contig1994:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD21_HUMAN (ER lumen protein retaining receptor 1 OS=Homo sapiens GN=KDELR1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45
Identity = 85/164 (51.83%), Postives = 119/164 (72.56%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FR  GD++HL ++++LLLKI   +SCAGIS K+Q L+A+VF  RYLD+FTNYIS YNT MK++++  SF+ VW I  +     +YD + DTFR  F+V+P  +LA L+N  FT  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YR LY
Sbjct:    1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWLI--YSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.769e-44
Identity = 85/166 (51.20%), Postives = 120/166 (72.29%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVW--YIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFR+  D+ H  ++++LLLKI   +SC GIS ++Q L+A+ F TRYLD+FT++ S YNT+MK++FL  S   V+  ++K       +YD++ DTFR  F+V+P ++LAL+IN  F F EVMWTFS+YLEAVAI+PQL +L RT N + +T  Y+F LG+YR LY
Sbjct:    1 MNIFRITADLAHAVAIVILLLKIWKSRSCEGISGRSQILFAVTFFTRYLDLFTSFYSLYNTVMKVLFLAGSIGTVYLMWVK----FKATYDRNNDTFRIEFLVIPSIILALIINHEFMFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_RAT (ER lumen protein retaining receptor 2 OS=Rattus norvegicus GN=Kdelr2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.496e-43
Identity = 87/164 (53.05%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL GD++HLA++++LLLKI   +SCAGIS K+Q L+ALVF TRYLD+FT++IS YNT MKLI++  S++ V+ I  +     +YD + DTFR  F+V+P   L+ L+N  F+  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLI--YMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_MOUSE (ER lumen protein retaining receptor 2 OS=Mus musculus GN=Kdelr2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.496e-43
Identity = 87/164 (53.05%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL GD++HLA++++LLLKI   +SCAGIS K+Q L+ALVF TRYLD+FT++IS YNT MKLI++  S++ V+ I  +     +YD + DTFR  F+V+P   L+ L+N  F+  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLI--YMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_DANRE (ER lumen protein retaining receptor 2 OS=Danio rerio GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.496e-43
Identity = 86/164 (52.44%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL GD++HLA++++LLLKI   +SCAGIS K+Q L+ALVF TRYLD+ T++IS YNT MK+I++G +++ V+ I  +     +YD + DTFR  F+V+P   LA L+N  F+  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNIFRLTGDLSHLAAIIILLLKIWKSRSCAGISGKSQILFALVFTTRYLDLLTSFISLYNTCMKVIYIGCAYATVYLI--YAKFRATYDGNHDTFRAEFLVVPVGGLAFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFCLGVYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_BOVIN (ER lumen protein retaining receptor 2 OS=Bos taurus GN=KDELR2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.496e-43
Identity = 87/164 (53.05%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL GD++HLA++++LLLKI   +SCAGIS K+Q L+ALVF TRYLD+FT++IS YNT MKLI++  S++ V+ I  +     +YD + DTFR  F+V+P   L+ L+N  F+  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLI--YMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_CHICK (ER lumen protein retaining receptor 2 OS=Gallus gallus GN=KDELR2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.953e-43
Identity = 86/164 (52.44%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL GD++HLA++++LLLKI   +SCAGIS K+Q L+ALVF TRYLD+FT++IS YNT MKLI++  S++ V+ I  +     +YD + DTFR  F+++P   L+ L+N  F+  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNIFRLTGDLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLI--YMKFKATYDGNHDTFRVEFLIVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_XENLA (ER lumen protein retaining receptor 2 OS=Xenopus laevis GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 84/164 (51.22%), Postives = 124/164 (75.61%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FRL+GD+ HLA++++LLLKI   +SCAGIS K+Q L+A+VF TRYLD+FT++IS YNT MK+I++G +++ V+ I  +     +YD + DTFR  F+V+P   L++L+N  F+  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNVFRLSGDLCHLAAIIILLLKIWNSRSCAGISGKSQLLFAMVFTTRYLDLFTSFISLYNTSMKVIYMGCAYATVYLI--YMKFKATYDGNHDTFRVEFLVVPVGGLSVLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_HUMAN (ER lumen protein retaining receptor 2 OS=Homo sapiens GN=KDELR2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.551e-43
Identity = 87/164 (53.05%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL GD++HLA++++LLLKI   +SCAGIS K+Q L+ALVF TRYLD+FT++IS YNT MK+I+L  S++ V+ I  +     +YD + DTFR  F+V+P   L+ L+N  F+  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKVIYLACSYATVYLI--YLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_XENTR (ER lumen protein retaining receptor 2 OS=Xenopus tropicalis GN=kdelr2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.684e-43
Identity = 84/164 (51.22%), Postives = 124/164 (75.61%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FRL+GD++HLA++++LLLKI   +SCAGIS K+Q L+ALVF TRYLD+ T++IS YNT MK+I++G +++ V+ I  +     +YD + DTFR  F+V+P   L++L+N  F+  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNVFRLSGDLSHLAAIIILLLKIWKSRSCAGISGKSQLLFALVFTTRYLDLLTSFISLYNTSMKVIYIGCAYATVYLI--YMKFKATYDGNHDTFRVEFLVVPVGGLSVLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALY 162          
The following BLAST results are available for this feature:
BLAST of FC925466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ERD21_HUMAN7.931e-4551.83ER lumen protein retaining receptor 1 OS=Homo sapi... [more]
ERD2_CAEBR8.769e-4451.20ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD22_RAT1.496e-4353.05ER lumen protein retaining receptor 2 OS=Rattus no... [more]
ERD22_MOUSE1.496e-4353.05ER lumen protein retaining receptor 2 OS=Mus muscu... [more]
ERD22_DANRE1.496e-4352.44ER lumen protein retaining receptor 2 OS=Danio rer... [more]
ERD22_BOVIN1.496e-4353.05ER lumen protein retaining receptor 2 OS=Bos tauru... [more]
ERD22_CHICK1.953e-4352.44ER lumen protein retaining receptor 2 OS=Gallus ga... [more]
ERD22_XENLA2.551e-4351.22ER lumen protein retaining receptor 2 OS=Xenopus l... [more]
ERD22_HUMAN2.551e-4353.05ER lumen protein retaining receptor 2 OS=Homo sapi... [more]
ERD22_XENTR5.684e-4351.22ER lumen protein retaining receptor 2 OS=Xenopus t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI23FM1 TF Citrus clementina cDNA clone KN0AAP3YI23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925466 ID=FC925466; Name=FC925466; organism=Citrus clementina; type=EST; length=655bp
ACGCAAAACTGTCTTAGAAAAGCTTCCCTTGGCTGTTGGGTCGACCGGAG
ATCTGAGGAAATTTCATCTTTACATTTACCAGAAATCACATTCCGGTGAT
CCAAACACTTTGTAAAATCACATTTTTCCAAAAAAAAAAAGAAGTAAGGA
AAAAGAAAAAAAGATGAATATATTCAGGTTAGCAGGGGACATGACCCATT
TGGCCAGCGTCCTTGTTTTGCTCCTCAAGATCCACACCATCAAATCTTGT
GCTGGTATATCCCTGAAGACTCAGGAACTCTACGCTCTCGTCTTTGCTAC
TCGCTACTTGGATATATTTACAAATTACATTTCATTCTATAATACTATAA
TGAAGTTAATATTCCTGGGGAGCTCTTTCTCAATTGTTTGGTACATAAAG
CGCCACAAGATTGTTCATAGATCTTATGATAAGGACCAAGACACATTTCG
CCATTGGTTTATCGTGCTGCCTTGCCTGGTTCTGGCCTTACTTATAAATG
AGAGGTTTACCTTTAAAGAGGTAATGTGGACATTTTCTTTATATTTAGAA
GCCGTTGCCATACTTCCTCAGCTTGTATTGTTGCAGAGAACAAGAAATAT
CGATAACTTGACAGGACAATATGTTTTTCTCCTCGGCGCATACCGTGCGT
TGTAC
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