FC925466

Overview
NameFC925466
Unique NameFC925466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1994 contig Ccv1_Contig1994:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD23_XENLA (ER lumen protein retaining receptor 3 OS=Xenopus laevis GN=kdelr3 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.423e-43
Identity = 85/164 (51.83%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFR+ GD++HL ++++LLLK+   KSCAGIS K+Q L+ALVF TRYLD+FT +IS YNT+MK+IFL  ++  V+ I  +  + +SYD + DTFR  F+++P + L+ L N  FT  E++WTFS+YLE+VAILPQL ++ +T   +++T  Y+F LG YR LY
Sbjct:    1 MNIFRILGDVSHLLAIIILLLKMWKSKSCAGISGKSQLLFALVFTTRYLDLFTVFISPYNTVMKIIFLACAYVTVYLI--YGKLRKSYDSENDTFRLEFLLVPVIGLSFLENYEFTPLEILWTFSIYLESVAILPQLFMISKTGEAESITTHYLFFLGLYRVLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.160e-42
Identity = 86/164 (52.44%), Postives = 121/164 (73.78%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFR++ DM+HL ++++LLLKI   +SC+GIS ++Q L+ALVF  RYLD+F+ YIS YNT MK+ FL ++++ V Y+   K    +Y ++ DTFR   +++P  +LALLIN  F   E++WTFS+YLEAVAILPQL LLQ T + + +T  Y+F LG+YRALY
Sbjct:    1 MNIFRISADMSHLLAIIILLLKIWKSRSCSGISARSQILFALVFTARYLDLFSTYISLYNTTMKITFLAATYATV-YLMFFKF-RSTYMRESDTFRVELLIVPAAILALLINHDFAPFELLWTFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFALGSYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_ENTHI (ER lumen protein retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.684e-42
Identity = 78/163 (47.85%), Postives = 117/163 (71.78%), Query Frame = 2
Query:  167 NIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            N+FR++ D+ HL S+  LL KI + K+C GISL++Q L+ +V+ TRYLDIF N+ S YNTI+K+++L +S   ++ I +      +YDK  DT   W++++PC+VLA +  E ++  E+ WTFS++LEAVAILPQ++LL+ T  ++NL  QY+F LG YRALY
Sbjct:    4 NLFRISADLVHLLSIYFLLTKIISHKNCIGISLRSQILFFIVWVTRYLDIFYNFYSLYNTILKIVYLTTSAYTIYLISKR--FRATYDKIHDTLNVWYLIVPCIVLAFIFTEDYSITEICWTFSIFLEAVAILPQILLLRSTGEVENLNSQYIFCLGLYRALY 164          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD23_XENTR (ER lumen protein retaining receptor 3 OS=Xenopus tropicalis GN=kdelr3 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.684e-42
Identity = 82/164 (50.00%), Postives = 122/164 (74.39%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FR++GD++HL ++++LLLK+   KSCAGIS K+Q L+ALVF TRYLD+FT +IS YNT+MK++FL  ++  V+ I  +    ++YD + DTFR  F+++P + L+ L N  FT  E++WTFS+YLE+VAILPQL ++ +T   +++T  Y+F LG YR LY
Sbjct:    1 MNVFRISGDVSHLLAIIILLLKMWKSKSCAGISGKSQLLFALVFTTRYLDLFTVFISAYNTVMKIVFLVCAYVTVYLI--YGKFRKAYDSENDTFRLEFLLVPVIGLSFLENYEFTPLEILWTFSIYLESVAILPQLFMISKTGEAESITTHYLFFLGLYRVLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_DICDI (ER lumen protein retaining receptor OS=Dictyostelium discoideum GN=kdelr PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.207e-42
Identity = 83/170 (48.82%), Postives = 116/170 (68.24%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINER------FTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+F   GDM HL S+L+LL KI   KSCAG+SLK+Q L+ +VF  RYLD+FTNY+S Y T MK+ ++  S+  +  I R      +YDKD DTF+  +++  C +L+L+  ++       TF E++WTFS+YLE++AILPQL+LLQRT  ++ LT  Y+ LLG YRA Y
Sbjct:    1 MNLFSFLGDMLHLGSMLILLFKIKNDKSCAGVSLKSQILFTIVFTARYLDLFTNYVSLYITFMKITYIAVSYYTLHLIARK--YKFTYDKDHDTFKIVYLIASCAILSLITYDKTTIGIYSTFLEILWTFSIYLESIAILPQLILLQRTGEVEALTSNYIVLLGGYRAFY 168          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD23_DANRE (ER lumen protein retaining receptor 3 OS=Danio rerio GN=kdelr3 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.828e-41
Identity = 85/164 (51.83%), Postives = 118/164 (71.95%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL+GD+ HL ++++L LKI   KSCAGIS K+Q L+ALVF TRYLD+FT+YIS YNT+MK+++L  ++S V  I        SYD + D+FR  F+++P   L+ L N  FT  E++WTFS+YLE+VAILPQL ++ +T   +++T  Y+  LG YRALY
Sbjct:    1 MNIFRLSGDVCHLIAIIILFLKIWRSKSCAGISGKSQVLFALVFTTRYLDLFTSYISAYNTVMKVVYLLLAYSTVGLIFFR--FRNSYDSESDSFRVEFLLVPVAGLSFLENYAFTPLEILWTFSIYLESVAILPQLFMITKTGEAESITAHYLLFLGLYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD23_MOUSE (ER lumen protein retaining receptor 3 OS=Mus musculus GN=Kdelr3 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.073e-41
Identity = 81/164 (49.39%), Postives = 121/164 (73.78%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FR+ GD++HL ++++LL+KI   KSCAGIS K+Q L+ALVF TRYLD+F+N+IS YNT+MK++FL  ++  V+ I  +    +++D + DTFR  F+++P   L+ L+N  +T  EV+WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YR LY
Sbjct:    1 MNVFRILGDLSHLLAMILLLVKIWRSKSCAGISGKSQILFALVFTTRYLDLFSNFISIYNTVMKVVFLLCAYVTVYMI--YWKFRKTFDIENDTFRLEFLLVPVTGLSFLVNYSYTPMEVLWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRLLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD23_HUMAN (ER lumen protein retaining receptor 3 OS=Homo sapiens GN=KDELR3 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.073e-41
Identity = 81/164 (49.39%), Postives = 119/164 (72.56%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN+FR+ GD++HL ++++LL KI   K C GIS K+Q L+ALVF TRYLD+FTN+IS YNT+MK++FL  ++  V+ I  +    +++D + DTFR  F+++P + L+ L N  FT  E++WTFS+YLE+VAILPQL ++ +T   + +T  Y+F LG YRALY
Sbjct:    1 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYNTVMKVVFLLCAYVTVYMI--YGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_KLULA (ER lumen protein retaining receptor OS=Kluyveromyces lactis GN=ERD2 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.640e-40
Identity = 79/167 (47.31%), Postives = 118/167 (70.66%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKD---QDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            +N+FR+AGD +HLAS+++L+  I T  S  GISLKTQ LY LVF TRYL++FT + S YN +MK++F+ SS  ++  +++ K  +    +D   +D F+  F+++PC++L L+ N RF+F ++ W+FSL+LE+VAILPQL +L +T     LT  Y+F LG YRALY
Sbjct:    2 LNVFRIAGDFSHLASIIILIQSITTSNSVDGISLKTQLLYTLVFITRYLNLFTKWTSLYNFLMKIVFISSSVYVIVLMRQQKFKNPVAYQDMITRDQFKIKFLIVPCILLGLIFNYRFSFIQICWSFSLWLESVAILPQLFMLTKTGKAKQLTSHYIFALGLYRALY 168          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_PLAFA (ER lumen protein retaining receptor OS=Plasmodium falciparum GN=ERD2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 72/165 (43.64%), Postives = 116/165 (70.30%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFR-HWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL GD+ HL S+ +L++K+   K+C GIS + QELY +VF  RY+D+F  ++SFYNT+MK+ F+ +    ++ I+    + ++Y++  D F+   +++ PCLVL+LL  + +    ++W+FS++LE+VAILPQLVLL++ R ++N+T  YV  +G YRA Y
Sbjct:    1 MNIFRLIGDILHLVSMYILIMKLKKSKNCIGISCRMQELYLIVFLCRYIDLFFVFVSFYNTVMKITFILTIAYTIYLIRLKLPISQTYNRKVDNFKSEKYLIPPCLVLSLLTCKTYNLYNILWSFSIWLESVAILPQLVLLEKQREVENITSHYVITMGLYRAFY 165          
The following BLAST results are available for this feature:
BLAST of FC925466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ERD23_XENLA7.423e-4351.83ER lumen protein retaining receptor 3 OS=Xenopus l... [more]
ERD22_CAEEL2.160e-4252.44Putative ER lumen protein retaining receptor C28H8... [more]
ERD2_ENTHI3.684e-4247.85ER lumen protein retaining receptor OS=Entamoeba h... [more]
ERD23_XENTR3.684e-4250.00ER lumen protein retaining receptor 3 OS=Xenopus t... [more]
ERD2_DICDI8.207e-4248.82ER lumen protein retaining receptor OS=Dictyosteli... [more]
ERD23_DANRE1.828e-4151.83ER lumen protein retaining receptor 3 OS=Danio rer... [more]
ERD23_MOUSE4.073e-4149.39ER lumen protein retaining receptor 3 OS=Mus muscu... [more]
ERD23_HUMAN4.073e-4149.39ER lumen protein retaining receptor 3 OS=Homo sapi... [more]
ERD2_KLULA2.640e-4047.31ER lumen protein retaining receptor OS=Kluyveromyc... [more]
ERD2_PLAFA2.471e-3843.64ER lumen protein retaining receptor OS=Plasmodium ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI23FM1 TF Citrus clementina cDNA clone KN0AAP3YI23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925466 ID=FC925466; Name=FC925466; organism=Citrus clementina; type=EST; length=655bp
ACGCAAAACTGTCTTAGAAAAGCTTCCCTTGGCTGTTGGGTCGACCGGAG
ATCTGAGGAAATTTCATCTTTACATTTACCAGAAATCACATTCCGGTGAT
CCAAACACTTTGTAAAATCACATTTTTCCAAAAAAAAAAAGAAGTAAGGA
AAAAGAAAAAAAGATGAATATATTCAGGTTAGCAGGGGACATGACCCATT
TGGCCAGCGTCCTTGTTTTGCTCCTCAAGATCCACACCATCAAATCTTGT
GCTGGTATATCCCTGAAGACTCAGGAACTCTACGCTCTCGTCTTTGCTAC
TCGCTACTTGGATATATTTACAAATTACATTTCATTCTATAATACTATAA
TGAAGTTAATATTCCTGGGGAGCTCTTTCTCAATTGTTTGGTACATAAAG
CGCCACAAGATTGTTCATAGATCTTATGATAAGGACCAAGACACATTTCG
CCATTGGTTTATCGTGCTGCCTTGCCTGGTTCTGGCCTTACTTATAAATG
AGAGGTTTACCTTTAAAGAGGTAATGTGGACATTTTCTTTATATTTAGAA
GCCGTTGCCATACTTCCTCAGCTTGTATTGTTGCAGAGAACAAGAAATAT
CGATAACTTGACAGGACAATATGTTTTTCTCCTCGGCGCATACCGTGCGT
TGTAC
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