FC925466

Overview
NameFC925466
Unique NameFC925466
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_PLAF7 (ER lumen protein retaining receptor OS=Plasmodium falciparum (isolate 3D7) GN=ERD2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 72/165 (43.64%), Postives = 116/165 (70.30%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFR-HWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MNIFRL GD+ HL S+ +L++K+   K+C GIS + QELY +VF  RY+D+F  ++SFYNT+MK+ F+ +    ++ I+    + ++Y++  D F+   +++ PCLVL+LL  + +    ++W+FS++LE+VAILPQLVLL++ R ++N+T  YV  +G YRA Y
Sbjct:    1 MNIFRLIGDILHLVSMYILIMKLKKSKNCIGISCRMQELYLIVFLCRYIDLFFVFVSFYNTVMKITFILTIAYTIYLIRLKLPISQTYNRKVDNFKSEKYLIPPCLVLSLLTCKTYNLYNILWSFSIWLESVAILPQLVLLEKQREVENITSHYVITMGLYRAFY 165          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_SCHPO (ER lumen protein retaining receptor OS=Schizosaccharomyces pombe GN=erd2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 69/164 (42.07%), Postives = 106/164 (64.63%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFTNYISFYNTIMKLIFLGSSFSIVWYIKRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            M  F   GDM HLA++ +LL ++   K+C+G+SLK+  L+ LV+ TRYL++F  Y S Y  +M+++F+ S   I + +     +  +YDK  DTFR  +I+  C VLAL+    +T   ++WTFS++LE+VAILPQL +LQR+   ++LT  Y+F +  YR LY
Sbjct:    1 MTFFSALGDMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYYFLMRIVFIASESYICYLMLM--TLRPTYDKRLDTFRTEYILGGCAVLALIYPTSYTISNILWTFSIWLESVAILPQLFMLQRSGETESLTAHYLFAMCLYRGLY 162          
BLAST of FC925466 vs. ExPASy Swiss-Prot
Match: ERD2_YEAST (ER lumen protein retaining receptor OS=Saccharomyces cerevisiae GN=ERD2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.699e-32
Identity = 72/168 (42.86%), Postives = 110/168 (65.48%), Query Frame = 2
Query:  164 MNIFRLAGDMTHLASVLVLLLKIHTIKSCAGISLKTQELYALVFATRYLDIFT-NYISFYNTIMKLIFLGSSFSIVWYI---KRHKIVHRSYDKDQDTFRHWFIVLPCLVLALLINERFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFLLGAYRALY 655
            MN FR+ GD++HL S+L+L+  I T +   GIS KTQ LYALVF TRYLD+ T +++S YN +MK+ F+ S+  IV  +   KR   +  +     DTF+   +++   ++++  + +FTF E+ W+FS++LE+VAILPQL +L +     +LT  Y+F +G YRALY
Sbjct:    1 MNPFRILGDLSHLTSILILIHNIKTTRYIEGISFKTQTLYALVFITRYLDLLTFHWVSLYNALMKIFFIVSTAYIVVLLQGSKRTNTIAYNEMLMHDTFKIQHLLIGSALMSVFFHHKFTFLELAWSFSVWLESVAILPQLYMLSKGGKTRSLTVHYIFAMGLYRALY 168          
The following BLAST results are available for this feature:
BLAST of FC925466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ERD2_PLAF72.471e-3843.64ER lumen protein retaining receptor OS=Plasmodium ... [more]
ERD2_SCHPO2.026e-3242.07ER lumen protein retaining receptor OS=Schizosacch... [more]
ERD2_YEAST7.699e-3242.86ER lumen protein retaining receptor OS=Saccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YI23FM1 TF Citrus clementina cDNA clone KN0AAP3YI23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925466 ID=FC925466; Name=FC925466; organism=Citrus clementina; type=EST; length=655bp
ACGCAAAACTGTCTTAGAAAAGCTTCCCTTGGCTGTTGGGTCGACCGGAG
ATCTGAGGAAATTTCATCTTTACATTTACCAGAAATCACATTCCGGTGAT
CCAAACACTTTGTAAAATCACATTTTTCCAAAAAAAAAAAGAAGTAAGGA
AAAAGAAAAAAAGATGAATATATTCAGGTTAGCAGGGGACATGACCCATT
TGGCCAGCGTCCTTGTTTTGCTCCTCAAGATCCACACCATCAAATCTTGT
GCTGGTATATCCCTGAAGACTCAGGAACTCTACGCTCTCGTCTTTGCTAC
TCGCTACTTGGATATATTTACAAATTACATTTCATTCTATAATACTATAA
TGAAGTTAATATTCCTGGGGAGCTCTTTCTCAATTGTTTGGTACATAAAG
CGCCACAAGATTGTTCATAGATCTTATGATAAGGACCAAGACACATTTCG
CCATTGGTTTATCGTGCTGCCTTGCCTGGTTCTGGCCTTACTTATAAATG
AGAGGTTTACCTTTAAAGAGGTAATGTGGACATTTTCTTTATATTTAGAA
GCCGTTGCCATACTTCCTCAGCTTGTATTGTTGCAGAGAACAAGAAATAT
CGATAACTTGACAGGACAATATGTTTTTCTCCTCGGCGCATACCGTGCGT
TGTAC
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