FC925486

Overview
NameFC925486
Unique NameFC925486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:127..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.967e-38
Identity = 86/144 (59.72%), Postives = 108/144 (75.00%), Query Frame = 2
Query:  137 DVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYV-LQQFEN 565
            D ++ IGKTPLV LNRIV G  A + AK+E   P  SVK RIG +MI DAE++GL+ PG+  LIEPTSGNTGI LAF+AAA+G  L +TMP +MSLERR +L A+GA+LVLT+  +GM GAV++AE+I    P+ YV LQQF N
Sbjct:   10 DNSQTIGKTPLVRLNRIVKGAPATVLAKIEGRNPAYSVKCRIGAAMIWDAEQRGLLGPGKE-LIEPTSGNTGIALAFVAAARGIPLTLTMPETMSLERRKLLAAYGAKLVLTEGVKGMTGAVRRAEDIAASDPDRYVLLQQFRN 152          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_NEIMB (Cysteine synthase OS=Neisseria meningitidis serogroup B GN=cysK PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.027e-37
Identity = 82/147 (55.78%), Postives = 106/147 (72.11%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVL-QQFEN 565
            IA  +TELIG TPLV LNR+ +G  A +A KLE   P SSVKDRI  +MI  AE+ G I    +V++E TSGNTG+GLA + AA+GY+L ITMP SMS ER+M+L AFGAEL+LT  A GM GA+ KA+ + D  P++Y + +QF+N
Sbjct:    3 IANSITELIGNTPLVKLNRLTEGLKAEVAVKLEFFNPGSSVKDRIAEAMIEGAEKAGKINKN-TVIVEATSGNTGVGLAMVCAARGYKLAITMPESMSKERKMLLRAFGAELILTPAAEGMAGAIAKAKSLVDAHPDTYFMPRQFDN 148          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.027e-37
Identity = 84/146 (57.53%), Postives = 108/146 (73.97%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            +A  +TELIG TP+V LNR+ D   A +  KLE M P SSVKDRIG +MI  AE++G ++ G ++ IEPTSGNTGIGLA +AAAKG + I+ MP +MS+ERR +L A+GAELVLT  A GMKGA++KAEE+ +K    +V QQF N
Sbjct:    4 VANSITELIGNTPIVKLNRLADENSADVYLKLEYMNPGSSVKDRIGLAMIEAAEKEGKLKAGNTI-IEPTSGNTGIGLAMVAAAKGLKAILVMPDTMSMERRNLLRAYGAELVLTPGAEGMKGAIKKAEELAEK-HGYFVPQQFNN 147          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.516e-37
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  122 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFEN 565
            S I +D +  IG TPLV LNRI +G   RI AK+E   P  SVK RIG +MI DAE++G+++PG   L+EPTSGNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A+GMKGA+QKAEEI    P  Y +LQQF N
Sbjct:    2 SKIFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSN 146          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.516e-37
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  122 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFEN 565
            S I +D +  IG TPLV LNRI +G   RI AK+E   P  SVK RIG +MI DAE++G+++PG   L+EPTSGNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A+GMKGA+QKAEEI    P  Y +LQQF N
Sbjct:    2 SKIFEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSN 146          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_STRP6 (Cysteine synthase OS=Streptococcus pyogenes serotype M6 GN=cysK PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 5.898e-37
Identity = 82/146 (56.16%), Postives = 106/146 (72.60%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            I K +TEL+G+TP++ LNR++    A +  KLE   P SSVKDRI  SMI  AE +GLI PG+ V+IEPTSGNTGIGLA++ AAKGYR+II MP +MSLERR ++ A+GAELVLT  A GMKGA+ K E +  +   +++  QF N
Sbjct:    4 IYKTITELVGQTPIIKLNRLIPNEAADVYVKLEAFNPGSSVKDRIALSMIEAAEAEGLISPGD-VIIEPTSGNTGIGLAWVGAAKGYRVIIVMPETMSLERRQIIQAYGAELVLTPGAEGMKGAIAKTETLAIEL-GAWMPMQFNN 147          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.898e-37
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  122 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFEN 565
            S I +D +  IG TPLV LNRI +G   RI AK+E   P  SVK RIG +MI DAE++G+++PG   L+EPTSGNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A+GMKGA+QKAEEI    P  Y +LQQF N
Sbjct:    2 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSN 146          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.898e-37
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 2
Query:  122 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSY-VLQQFEN 565
            S I +D +  IG TPLV LNRI +G   RI AK+E   P  SVK RIG +MI DAE++G+++PG   L+EPTSGNTGI LA++AAA+GY+L +TMP +MS+ERR +L A GA LVLT+ A+GMKGA+QKAEEI    P  Y +LQQF N
Sbjct:    2 SKIYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVE-LVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSN 146          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.897e-35
Identity = 76/146 (52.05%), Postives = 103/146 (70.55%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            I  +  +LIG TPLV LNR+     A++  KLE   P  SVKDR  Y MI +AE+ GL++PG SV+IEPTSGNTGIGLA  AAA+GY+ I+ MP +M+ ER  +L A+GAE+VLT     M G+++KA+E+ ++ PNSY+  QF+N
Sbjct:    4 IVANTADLIGDTPLVRLNRLQPENAAQVYLKLEFFNPSGSVKDRAAYQMIIEAEQNGLLKPG-SVIIEPTSGNTGIGLAMNAAARGYKAILVMPDTMTKERINLLKAYGAEVVLTPGEERMPGSIKKAKELAEQIPNSYIPMQFDN 148          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_FLAS3 (Cysteine synthase OS=Flavobacterium sp. (strain K3-15 / DSM ID92-509) GN=cysK PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.478e-35
Identity = 76/144 (52.78%), Postives = 104/144 (72.22%), Query Frame = 2
Query:  134 KDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            ++  E IG TP+V +N + +     I  KLE   P  S+KDRI  +MI DAE KGL+   +S +IEPTSGNTGIGLA +AA KGY+LI+ MP SMS+ERR ++ A+GAE VLT   +GMKGA++KA E+ ++TPNS++ +QF+N
Sbjct:    4 QNALETIGNTPVVKINNLFNSD-HEIWIKLEKSNPGGSIKDRIALAMIEDAEAKGLLNK-DSTIIEPTSGNTGIGLALVAAVKGYKLILVMPESMSIERRKIMEAYGAEFVLTPREKGMKGAIEKANELAEETPNSWIPRQFDN 145          
The following BLAST results are available for this feature:
BLAST of FC925486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SRPG_SYNE76.967e-3859.72Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_NEIMB2.027e-3755.78Cysteine synthase OS=Neisseria meningitidis serogr... [more]
CYSK_BACSU2.027e-3757.53Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSK_ECOLI4.516e-3758.39Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO574.516e-3758.39Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CYSK_STRP65.898e-3756.16Cysteine synthase OS=Streptococcus pyogenes seroty... [more]
CYSK_SALTY5.898e-3758.39Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI5.898e-3758.39Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSM_BACSU1.897e-3552.05Probable cysteine synthase OS=Bacillus subtilis GN... [more]
CYSK_FLAS32.478e-3552.78Cysteine synthase OS=Flavobacterium sp. (strain K3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YK11FM1 TF Citrus clementina cDNA clone KN0AAP8YK11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925486 ID=FC925486; Name=FC925486; organism=Citrus clementina; type=EST; length=567bp
TTTGTTTTTCAATTTTCTACTGTTTTCCAGCTGCCTTGACATTGTTTACG
ATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTGTAACTTGAAAAAAAGAA
AAAAAAATGGTGGAGGAGAAGTCCGTGATTGCGAAAGATGTCACTGAATT
GATTGGTAAAACACCATTGGTGTATCTCAACCGCATTGTGGATGGTTGCG
TTGCTAGAATTGCTGCCAAGCTGGAGATGATGGAACCCTGCTCTAGCGTC
AAAGATAGAATTGGATACAGTATGATCGCTGATGCAGAGGAGAAGGGTCT
CATTAGACCAGGCGAGAGTGTCCTGATTGAGCCTACCAGCGGTAATACTG
GCATAGGGTTGGCATTCATGGCAGCTGCTAAGGGTTACAGACTTATAATT
ACCATGCCTGCTTCAATGAGTCTTGAAAGAAGAATGGTTCTCCTAGCTTT
TGGAGCTGAGCTTGTGCTCACTGATCCTGCCAGGGGCATGAAGGGAGCTG
TTCAGAAGGCAGAAGAGATAAGGGACAAGACACCGAATTCCTATGTCCTT
CAGCAGTTTGAAAACCC
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