FC925486

Overview
NameFC925486
Unique NameFC925486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:127..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK1_SCHPO (Cysteine synthase 1 OS=Schizosaccharomyces pombe GN=cys11 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.595e-18
Identity = 55/140 (39.29%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  152 IGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL--VLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            IG+TPL+ LN + +     I AK E   P  SVKDR  Y ++ DAE+KG +  G   ++E T+GNTGIGLA +A A+GY+ +I MP + S  +   L   GAE+  V   P         +A    + TPN+    QF+N
Sbjct:   21 IGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRG-GTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDN 159          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.181e-15
Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 2
Query:  140 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKG-LIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL------VLTDPARGMKGAVQKAEEIRDKTPN---SYVLQQFEN 565
            V ELIG TPLV +  +       I AKLE+  P  S KDR+  ++I  AEE G L+R     + E TSG+TGI +A +  A GYR  I++P   SLE+  +L + GA +       + DP + +  A +   E++ K+ N   +    QFEN
Sbjct:   49 VEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELK-KSGNGIRAVFADQFEN 199          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.082e-14
Identity = 44/126 (34.92%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  122 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGA 499
            S I+  + E +G TPL+ +  + +     I  K E M P  S KDR+   +I D E+KGL++ G S ++E T+G+TGI L  +  ++GY + + +P ++S E+  +L   GAE  +  P  GM  A
Sbjct:   36 SGISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKG-STIVEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIV-PIVGMNNA 159          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGES-VLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPA 481
            I   V  LIG T +V +  +       I AK E + P +S KDR+   MI  AEE G + P +S  + E T+G+TGI +A +  + GY   I MP+  S E+  +L   GA +    PA
Sbjct:   42 IVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQRVTPA 160          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSM_RALME (Cysteine synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=cysM PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 44/151 (29.14%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  125 VIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGA--ELVLTDPARG--MKGAVQKAEEIRDKTPNSYVLQQFEN 565
            ++   + E IG TPLV L R+     A + AKLE++ P  SVKDR    ++     +G I P  S +IE +SGN  I LA +   KG R    +   +S     +L  +GA  E V    ++G  ++  +++  ++  +  ++  + Q+ N
Sbjct:    1 MVCNSIIESIGNTPLVQLRRLFGRADAEVFAKLELLNPAGSVKDRPARYIVEKGLTEGAIGP-HSHVIESSSGNLAIALAMICGLKGLRFTAVVDPKISPTNLKILRCYGAGIEQVTAKDSQGGYLETRIERVRQMLREQRDAIWINQYAN 150          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  140 VTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAEL 463
            VT+LIG+TP++ ++  V G  A +  K+E   P  S+KDR+  SM+  A + G + PG ++ +E +SGNTG GLA  A   G R I  +    + ++  ++ A GAE+
Sbjct:    6 VTQLIGQTPVMSID--VPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTI-VESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEI 110          
The following BLAST results are available for this feature:
BLAST of FC925486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK1_SCHPO3.595e-1839.29Cysteine synthase 1 OS=Schizosaccharomyces pombe G... [more]
CYSK_YEAST2.181e-1536.84Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSK_DICDI1.082e-1434.92Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
CYSK2_SCHPO1.463e-1136.13Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
CYSM_RALME5.559e-1129.14Cysteine synthase OS=Ralstonia metallidurans (stra... [more]
Y4XP_RHISN9.482e-1137.04Putative cysteine synthase OS=Rhizobium sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YK11FM1 TF Citrus clementina cDNA clone KN0AAP8YK11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925486 ID=FC925486; Name=FC925486; organism=Citrus clementina; type=EST; length=567bp
TTTGTTTTTCAATTTTCTACTGTTTTCCAGCTGCCTTGACATTGTTTACG
ATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTGTAACTTGAAAAAAAGAA
AAAAAAATGGTGGAGGAGAAGTCCGTGATTGCGAAAGATGTCACTGAATT
GATTGGTAAAACACCATTGGTGTATCTCAACCGCATTGTGGATGGTTGCG
TTGCTAGAATTGCTGCCAAGCTGGAGATGATGGAACCCTGCTCTAGCGTC
AAAGATAGAATTGGATACAGTATGATCGCTGATGCAGAGGAGAAGGGTCT
CATTAGACCAGGCGAGAGTGTCCTGATTGAGCCTACCAGCGGTAATACTG
GCATAGGGTTGGCATTCATGGCAGCTGCTAAGGGTTACAGACTTATAATT
ACCATGCCTGCTTCAATGAGTCTTGAAAGAAGAATGGTTCTCCTAGCTTT
TGGAGCTGAGCTTGTGCTCACTGATCCTGCCAGGGGCATGAAGGGAGCTG
TTCAGAAGGCAGAAGAGATAAGGGACAAGACACCGAATTCCTATGTCCTT
CAGCAGTTTGAAAACCC
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