FC925490

Overview
NameFC925490
Unique NameFC925490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1996 contig Ccv1_Contig1996:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: GSK3A_RAT (Glycogen synthase kinase-3 alpha OS=Rattus norvegicus GN=Gsk3a PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.940e-66
Identity = 120/171 (70.18%), Postives = 139/171 (81.29%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 513
            +S+ CSRYYRAPELIFGAT+YT++ID+WS GCVLAELLLGQP+FPG+SGVDQLVEIIK+LGTPTRE+I+ MNPNYTEFKFPQIKAHPW K+F  R PPEA+ L S LL+Y+PS R + LEACAH FFD+LR   T LPN RPLP LFNF+  EL+     L   LIP H R
Sbjct:  277 VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFKSRTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRSLGTQLPNNRPLPPLFNFSPGELS-IQPSLNAILIPPHLR 446          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 5.146e-65
Identity = 112/171 (65.50%), Postives = 139/171 (81.29%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFH-KRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHA 510
            +S+ CSR+YRAPELIFG+T YTT ID+WS+GCVLAELLLGQPLFPGE+G+DQLVEIIK+LGTPT+E+I  MNP YT FKFP+IKA+PW ++F  K +P E++DL+S++L Y PS R   +E CAHPFFD+LRDP TCLP+G+PLP LFNFT  E      +L + LIP HA
Sbjct:  212 VSYICSRHYRAPELIFGSTNYTTTIDVWSLGCVLAELLLGQPLFPGENGIDQLVEIIKVLGTPTKEQIHAMNPYYTSFKFPEIKANPWPRVFKAKDVPAESIDLISKILLYDPSSRLKPVEICAHPFFDELRDPKTCLPDGKPLPPLFNFTIAEQTSIGPKLAKTLIPSHA 382          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: SGG_DROME (Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.497e-64
Identity = 117/170 (68.82%), Postives = 140/170 (82.35%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLR-DPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEH 507
            +S+ CSRYYRAPELIFGA  YTT ID+WS GCVLAELLLGQP+FPG+SGVDQLVE+IK+LGTPTRE+I+ MNPNYTEFKFPQIK+HPW K+F  R P EA++LVS LL+Y+PS R T L+ACAHPFFD+LR + N  LPNGR +P LFNFT  EL+     L  +L+P+H
Sbjct:  765 VSYICSRYYRAPELIFGAINYTTKIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEVIKVLGTPTREQIREMNPNYTEFKFPQIKSHPWQKVFRIRTPTEAINLVSLLLEYTPSARITPLKACAHPFFDELRMEGNHTLPNGRDMPPLFNFTEHELS-IQPSLVPQLLPKH 933          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: GSK3A_MOUSE (Glycogen synthase kinase-3 alpha OS=Mus musculus GN=Gsk3a PE=1 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.688e-63
Identity = 118/172 (68.60%), Postives = 138/172 (80.23%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIF-HKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTLFNFTAQELAGASNELRQRLIPEHAR 513
            +S+ CSRYYRAPELIFGAT+YT++ID+WS GCVLAELLLGQP+FPG+SGVDQLVEIIK+LGTPTRE+I+ MNPNYTEFKFPQIKAHPW K+F   + PPEA+ L S LL+Y+PS R + LEACAH FFD+LR     LPN RPLP LFNF+  EL+     L   LIP H R
Sbjct:  277 VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFKSSKTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRRLGAQLPNDRPLPPLFNFSPGELS-IQPSLNAILIPPHLR 447          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: GSK3_SCHPO (Protein kinase gsk3 OS=Schizosaccharomyces pombe GN=gsk3 PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 113/178 (63.48%), Postives = 139/178 (78.09%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNG-------RPLPTLFNFTAQELAGASNELRQRLIPEHAR 513
            +S+ CSRYYRAPELIFGAT+YT AID+WS GCV+AEL+LG PLFPGESG+DQLVEIIKILGTP+RE+IK MNPNY E +FPQI+  P  ++F + +P +ALDL+S++LQY+P+ R TA EA  HPFFD+LRDPNT L N        R LP LFNF+  EL+    +L Q+LIP HAR
Sbjct:  190 VSYICSRYYRAPELIFGATDYTHAIDIWSTGCVMAELMLGHPLFPGESGIDQLVEIIKILGTPSREQIKTMNPNYMEHRFPQIRPQPLSRVFSRSVPLDALDLLSKMLQYTPTDRLTAAEAMCHPFFDELRDPNTKLHNSRNPDASPRHLPELFNFSPFELS-IRPDLNQKLIPSHAR 366          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.198e-59
Identity = 101/146 (69.18%), Postives = 125/146 (85.62%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTL 438
            +S+ CSRYYRAPELIFGAT YT +ID+WS G V+AELLLGQP+FPG+SGVDQLVEIIK+LGTPTRE+I+ MNPNY EFKFPQIKAHPW+K+F    P EA+DL+S++++Y+P+ R T   AC H FFD+LR+P+  LP+GRPLPTL
Sbjct:  194 VSYICSRYYRAPELIFGATNYTNSIDVWSAGTVMAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIQSMNPNYKEFKFPQIKAHPWNKVFRVHTPAEAIDLISKIIEYTPTSRPTPQAACQHAFFDELRNPDARLPSGRPLPTL 339          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.024e-57
Identity = 100/154 (64.94%), Postives = 126/154 (81.82%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLR-DPNTCLPNGRPLPTLFNFTAQE 459
            +S+ CSRYYRAPELIFG+T+YTT IDMWS GCV++ELLLGQ +FPG+SGVDQ+VEI+K++GTPT E++  MNP+Y +FK P++K HPW K+F  R P EA+DLVS++L YSP+ R + L  CAHPFFD+LR DP+  LPNGR LP LFNFT  E
Sbjct:  191 VSYICSRYYRAPELIFGSTDYTTKIDMWSAGCVMSELLLGQLIFPGDSGVDQIVEIVKVMGTPTSEQLHDMNPHYKQFKLPELKPHPWSKVFRIRTPAEAIDLVSKMLIYSPNARVSPLMGCAHPFFDELRQDPHQQLPNGRSLPPLFNFTDYE 344          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: GSK3_CAEBR (Glycogen synthase kinase-3 OS=Caenorhabditis briggsae GN=gsk-3 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.950e-57
Identity = 99/146 (67.81%), Postives = 122/146 (83.56%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLPTL 438
            +S+ CSRYYRAPELIFGAT YT +ID+WS G V+AELLLGQP+FPG+SGVDQLVEIIK+LGTPTRE+I+ MNPNY EFKFPQIKAHPW+K+F    P EA+DL+S++++Y+P+ R T   AC H FFD+LR P+  LP+GR LP L
Sbjct:  194 VSYICSRYYRAPELIFGATNYTNSIDVWSAGTVIAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIQSMNPNYKEFKFPQIKAHPWNKVFRVHTPAEAIDLISKIIEYTPTSRPTPQAACQHAFFDELRSPDARLPSGRALPQL 339          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: GSK31_SCHPO (Protein kinase gsk31 OS=Schizosaccharomyces pombe GN=gsk31 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 89/183 (48.63%), Postives = 118/183 (64.48%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPN--------GRPLPTLFNFTAQELAGASNELRQRLIPEHARK*FD 525
            +S+ CSRYYRAPEL+FGAT YTT ID+WS  CV+AEL +G+PLFPG+S V+QLVEII++LGTP+  EI  MNPNY     P ++ H    +        A+DL+ ++L Y PS R +A+E   HPFFD+LRDPN C+ +         R LP LFNF   EL+   N L + ++P H  +  D
Sbjct:  183 VSYICSRYYRAPELVFGATHYTTKIDVWSAACVIAELFIGRPLFPGDSSVEQLVEIIRVLGTPSYHEISVMNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRISAIEVLTHPFFDELRDPN-CMYHCSRDEGTIERHLPPLFNFNLAELSIRPN-LNKAILPPHVYESLD 363          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: MDS1_YEAST (Serine/threonine-protein kinase MDS1/RIM11 OS=Saccharomyces cerevisiae GN=MDS1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.781e-41
Identity = 79/131 (60.31%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    1 ISFFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLR 393
            +S+ CSRYYRAPELIFGAT YT  ID+WS GCV+AELLLGQP+FPGESG+DQLVEIIKILGTP+++EI  MNPNY E KFPQIK  P  ++F K+   + ++ ++ +L+Y P  R  AL+    P+FD+L+
Sbjct:  197 VSYICSRYYRAPELIFGATNYTNQIDIWSSGCVMAELLLGQPMFPGESGIDQLVEIIKILGTPSKQEICSMNPNYMEHKFPQIKPIPLSRVF-KKEDDQTVEFLADVLKYDPLERFNALQCLCSPYFDELK 326          
The following BLAST results are available for this feature:
BLAST of FC925490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSK3A_RAT7.940e-6670.18Glycogen synthase kinase-3 alpha OS=Rattus norvegi... [more]
GSK3_DICDI5.146e-6565.50Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
SGG_DROME1.497e-6468.82Protein kinase shaggy OS=Drosophila melanogaster G... [more]
GSK3A_MOUSE3.688e-6368.60Glycogen synthase kinase-3 alpha OS=Mus musculus G... [more]
GSK3_SCHPO8.503e-6063.48Protein kinase gsk3 OS=Schizosaccharomyces pombe G... [more]
GSK3_CAEEL7.198e-5969.18Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]
GSK3H_DROME3.024e-5764.94Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
GSK3_CAEBR3.950e-5767.81Glycogen synthase kinase-3 OS=Caenorhabditis brigg... [more]
GSK31_SCHPO4.529e-4548.63Protein kinase gsk31 OS=Schizosaccharomyces pombe ... [more]
MDS1_YEAST1.781e-4160.31Serine/threonine-protein kinase MDS1/RIM11 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ02FM1 TF Citrus clementina cDNA clone KN0AAP3YJ02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925490 ID=FC925490; Name=FC925490; organism=Citrus clementina; type=EST; length=750bp
ATATCGTTTTTCTGCTCAAGATATTACAGGGCCCCGGAACTTATATTTGG
GGCTACAGAATACACAACTGCCATTGATATGTGGTCCATTGGATGTGTCT
TGGCTGAGCTTCTTCTTGGACAGCCTTTATTTCCTGGGGAAAGTGGAGTT
GACCAGCTCGTCGAAATCATTAAGATTCTGGGAACACCAACAAGAGAAGA
AATTAAGTGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAAATTA
AAGCTCATCCATGGCATAAGATATTTCACAAACGAATGCCCCCTGAAGCA
CTGGATCTTGTCTCAAGGTTGCTTCAGTATTCACCAAGCCTACGATGCAC
TGCTTTGGAGGCATGTGCACACCCCTTCTTTGATGATTTGAGAGACCCCA
ATACTTGTTTGCCAAATGGGCGACCCCTACCTACTCTTTTCAATTTCACT
GCTCAAGAATTGGCTGGTGCCTCTAATGAATTGCGACAACGTCTTATCCC
GGAGCACGCAAGGAAATGATTTGATGACTGAGATGGATCCATATGCAATA
TAAATCAATTTTTGGATGCTTAGGTATGCCACAAGCCATTGTTGCCCTAC
AGGGCAACCGATTTTTTTCCCCTTCACCAATGAGTTGGTTCGTGGCTGGG
AGGCTGCTCAAGGATTTTTATGATGAATCCGCTGATGGGAGTGAGTTGTG
GATGGAAAAAGGTTTGACATTTATTTTCCAATTACCAATGTTTAATTTGT
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