FC925490

Overview
NameFC925490
Unique NameFC925490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: MK04_HUMAN (Mitogen-activated protein kinase 4 OS=Homo sapiens GN=MAPK4 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.018e-12
Identity = 40/131 (30.53%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQ---LVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDP 399
            +++YR+P L+     YT AIDMW+ GC+LAE+L G+ LF G   ++Q   ++E I ++    ++E+  + P++    + ++K  P  K+    +  EA+D + ++L ++P  R TA     HP+      P
Sbjct:  191 TKWYRSPRLLLSPNNYTKAIDMWAAGCILAEMLTGRMLFAGAHELEQMQLILETIPVIREEDKDELLRVMPSFVSSTW-EVK-RPLRKLL-PEVNSEAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCP 318          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CDK8_DROME (Cell division protein kinase 8 OS=Drosophila melanogaster GN=Cdk8 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.018e-12
Identity = 53/155 (34.19%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   22 YYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLF---------PGESGVDQLVEIIKILGTPTR---EEIKCMNPNYT---EFKFPQIKAHPWHKIF--HKRMP-PEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRPLP 432
            +YRAPEL+ GA  YT AID+W+IGC+ AELL  +P+F               DQL  I  ++G P     E+IK M  ++T   +FK          K    HK  P  +A  L+ +LL   P+ R T+ +A    +F +   P   +  G P+P
Sbjct:  198 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPQDKDWEDIKKMPEHHTLTKDFKRSTYSTCSLAKYMERHKIKPDSKAFHLLQKLLLMDPNKRITSEQAMQDQYFQEEPQPTQDVFAGCPIP 352          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: DYR1B_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 1B OS=Homo sapiens GN=DYRK1B PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 52/167 (31.14%), Postives = 76/167 (45.51%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRM----------------------------------PPEAL---DLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNT 405
            SR+YR+PE++ G T Y  AIDMWS+GC+L E+  G+PLF G + VDQ+  I+++LG P    +    P   ++ F ++    W     K +                                  P + L   DLV R+L+Y P+ R + L A  H FF    D  T
Sbjct:  276 SRFYRSPEVLLG-TPYDLAIDMWSLGCILVEMHTGEPLFSGSNEVDQMNRIVEVLGIPPAAMLD-QAPKARKY-FERLPGGGWTLRRTKELRKDYQGPGTRRLQEVLGVQTGGPGGRRAGEPGHSPADYLRFQDLVLRMLEYEPAARISPLGALQHGFFRRTADEAT 439          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: BUR1_DEBHA (Serine/threonine-protein kinase BUR1 OS=Debaryomyces hansenii GN=BUR1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 43/125 (34.40%), Postives = 61/125 (48.80%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTR---EEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFF 381
            +R+YR PEL+ G   YTTA+DMW IGCV  EL   +P+  G++   Q   I  ++G P      E   + PN  +              F   M P+ ++L+S LL   P  R  AL+A  H +F
Sbjct:  223 TRWYRPPELLLGERRYTTAVDMWGIGCVFGELFTRKPILVGKTDSHQAQLIFDLVGPPNSISWSEATSL-PNKHDLNIGLTCQRSLESKFAPLMNPDGINLLSGLLTLDPYKRFNALDALNHNYF 346          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: Y2550_DICDI (Probable cyclin-dependent serine/threonine-protein kinase DDB_G0292550 OS=Dictyostelium discoideum GN=DDB_G0292550 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 43/131 (32.82%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMN--PNYTEFKFPQIKAHPWHKI----FHKRMPPEALDLVSRLLQYSPSLRCTALEACAHP-FFDD 387
            S +YR PEL+ G+  Y   +D+WS+GC++ E+L G  +F G +   QL  I K  GTPT +    ++    Y+ +   + K +P   +      K      LD++ R+L   P  R +  EA  HP FF+D
Sbjct:  160 SLFYRPPELLMGSRNYGPEVDIWSVGCIIVEMLTGFYMFAGSNDSLQLELIFKTFGTPTEKNWPGISKLSGYSPYLGSKSKKYPSKSLKDISKFKSFSNSTLDIILRMLTLCPKNRISTKEALNHPWFFED 290          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CSK22_YEAST (Casein kinase II subunit alpha' OS=Saccharomyces cerevisiae GN=CKA2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLG-QPLFPGESGVDQLVEIIKILGTPTREEIKCMN------PNYTEFKFPQIKAHPWHKIFH---KRMPPEALDLVSRLLQYSPSLRCTALEACAHPFF 381
            SRY++ PEL+    +Y  ++D+WS+GC+LA ++   +P F G S  DQLV+I  +LGT  +E +  +       P+  +          W        K   PE +DL+  LL+Y    R TA EA  H FF
Sbjct:  205 SRYHKGPELLVNLNQYDYSLDLWSVGCMLAAIVFKKEPFFKGSSNPDQLVKIATVLGT--KELLGYLGKYGLHLPSEYDNIMRDFTKKSWTHFITSETKLAVPEVVDLIDNLLRYDHQERLTAKEAMDHKFF 334          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CDK12_RAT (Cell division protein kinase 12 OS=Rattus norvegicus GN=Cdk12 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 44/130 (33.85%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   22 YYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRM-------PPEALDLVSRLLQYSPSLRCTALEACAHPFFDDL 390
            +YR PEL+ G   YT AID+WS GC+L EL   +P+F     + QL  I ++ G+P      C        K P        K + +R+       P  ALDL+  +L   PS RCTA +     F  D+
Sbjct:  896 WYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSP------CPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDV 1019          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CDK12_MOUSE (Cell division protein kinase 12 OS=Mus musculus GN=Cdk12 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 44/130 (33.85%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   22 YYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRM-------PPEALDLVSRLLQYSPSLRCTALEACAHPFFDDL 390
            +YR PEL+ G   YT AID+WS GC+L EL   +P+F     + QL  I ++ G+P      C        K P        K + +R+       P  ALDL+  +L   PS RCTA +     F  D+
Sbjct:  896 WYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSP------CPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDV 1019          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CDK12_HUMAN (Cell division protein kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 44/130 (33.85%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   22 YYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRM-------PPEALDLVSRLLQYSPSLRCTALEACAHPFFDDL 390
            +YR PEL+ G   YT AID+WS GC+L EL   +P+F     + QL  I ++ G+P      C        K P        K + +R+       P  ALDL+  +L   PS RCTA +     F  D+
Sbjct:  900 WYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSP------CPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDV 1023          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: MK04_MOUSE (Mitogen-activated protein kinase 4 OS=Mus musculus GN=Mapk4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 40/131 (30.53%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQ---LVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDP 399
            +++YR+P L+     YT AIDMW+ GC+LAE+L G+ LF G   ++Q   +++ I ++    +EE+  + P++    + ++K  P  K+    +  EA+D + ++L ++P  R TA     HP+      P
Sbjct:  191 TKWYRSPRLLLSPNNYTKAIDMWAAGCILAEMLTGKMLFAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTW-EVK-RPLRKLL-PDVNSEAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCP 318          
The following BLAST results are available for this feature:
BLAST of FC925490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MK04_HUMAN1.018e-1230.53Mitogen-activated protein kinase 4 OS=Homo sapiens... [more]
CDK8_DROME1.018e-1234.19Cell division protein kinase 8 OS=Drosophila melan... [more]
DYR1B_HUMAN1.330e-1231.14Dual specificity tyrosine-phosphorylation-regulate... [more]
BUR1_DEBHA1.330e-1234.40Serine/threonine-protein kinase BUR1 OS=Debaryomyc... [more]
Y2550_DICDI1.737e-1232.82Probable cyclin-dependent serine/threonine-protein... [more]
CSK22_YEAST1.737e-1234.09Casein kinase II subunit alpha' OS=Saccharomyces c... [more]
CDK12_RAT1.737e-1233.85Cell division protein kinase 12 OS=Rattus norvegic... [more]
CDK12_MOUSE1.737e-1233.85Cell division protein kinase 12 OS=Mus musculus GN... [more]
CDK12_HUMAN1.737e-1233.85Cell division protein kinase 12 OS=Homo sapiens GN... [more]
MK04_MOUSE2.269e-1230.53Mitogen-activated protein kinase 4 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ02FM1 TF Citrus clementina cDNA clone KN0AAP3YJ02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925490 ID=FC925490; Name=FC925490; organism=Citrus clementina; type=EST; length=750bp
ATATCGTTTTTCTGCTCAAGATATTACAGGGCCCCGGAACTTATATTTGG
GGCTACAGAATACACAACTGCCATTGATATGTGGTCCATTGGATGTGTCT
TGGCTGAGCTTCTTCTTGGACAGCCTTTATTTCCTGGGGAAAGTGGAGTT
GACCAGCTCGTCGAAATCATTAAGATTCTGGGAACACCAACAAGAGAAGA
AATTAAGTGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAAATTA
AAGCTCATCCATGGCATAAGATATTTCACAAACGAATGCCCCCTGAAGCA
CTGGATCTTGTCTCAAGGTTGCTTCAGTATTCACCAAGCCTACGATGCAC
TGCTTTGGAGGCATGTGCACACCCCTTCTTTGATGATTTGAGAGACCCCA
ATACTTGTTTGCCAAATGGGCGACCCCTACCTACTCTTTTCAATTTCACT
GCTCAAGAATTGGCTGGTGCCTCTAATGAATTGCGACAACGTCTTATCCC
GGAGCACGCAAGGAAATGATTTGATGACTGAGATGGATCCATATGCAATA
TAAATCAATTTTTGGATGCTTAGGTATGCCACAAGCCATTGTTGCCCTAC
AGGGCAACCGATTTTTTTCCCCTTCACCAATGAGTTGGTTCGTGGCTGGG
AGGCTGCTCAAGGATTTTTATGATGAATCCGCTGATGGGAGTGAGTTGTG
GATGGAAAAAGGTTTGACATTTATTTTCCAATTACCAATGTTTAATTTGT
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