FC925490

Overview
NameFC925490
Unique NameFC925490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1996 contig Ccv1_Contig1996:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CTK1_ENCCU (Probable CTD kinase subunit alpha homolog OS=Encephalitozoon cuniculi GN=CTK1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.269e-12
Identity = 39/123 (31.71%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   22 YYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMN--PNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFD 384
            +YRAPE++ G++ YT A+D+WS+GC+L E+ LG  +F G + + QL  +I   G+        +   P +  F+ PQ        I  ++    A++LVS++L   PS R T  +     +F+
Sbjct:  178 WYRAPEILLGSSSYTYAVDIWSLGCILTEMYLGHMIFQGSTEMLQLEMVIHACGSINENSYPGVQDLPGFRNFRLPQSPRRIEGII--RKHDASAVELVSKMLCLDPSKRITVEQVVGSKYFE 298          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CSK2A_ENCCU (Probable casein kinase II subunit alpha homolog OS=Encephalitozoon cuniculi GN=CKA1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12
Identity = 47/130 (36.15%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLL-GQPLFPGESGVDQLVEIIKILGTP------TREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFD 384
            SRYY+ PEL+     Y  ++D+WS GCVLAEL+   +P F GES  DQLV+I +ILG         + ++  +NP Y E    ++    +       +   A+DL+ ++L Y    R TA E   HP F+
Sbjct:  189 SRYYKGPELLVDYPYYDYSLDIWSFGCVLAELVFKKRPFFHGESNSDQLVKIARILGYTHLKKYVRKYKMAPLNPKY-EGVGERVLLSSFTPPGKTGLYTNAIDLLEKILIYDHQDRPTADECLRHPLFE 317          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CDC71_ENCCU (Probable cell division control protein 7 homolog 1 OS=Encephalitozoon cuniculi GN=CDC7-1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12
Identity = 47/144 (32.64%), Postives = 66/144 (45.83%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQ-PLFPGESGVDQLVEIIKILGTPT------------REEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTC 408
            +R +RAPE++F     T AIDMWS+G +   +L  Q P F     +D +VEI  I G               R  I  +      F+      +PW +I       +  DL+ R+L    S R TA +A +HPFFDDL+    C
Sbjct:  212 TRGFRAPEVLFRCQRQTGAIDMWSVGVIFLTILTTQYPFFYSSDDIDSIVEIATIFGHAEMRKAAKFYGRVWRSNIDSIPEERIPFETIVESLNPWAEI-----GSDGYDLLYRMLDLCSSSRITASDALSHPFFDDLKTHENC 350          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: DYR1A_XENLA (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Xenopus laevis GN=dyrk1a PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 31/58 (53.45%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTP 189
            SR+YR+PE++ G T Y  AIDMWS+GC+L E+  G+PLF G + VDQ+ +I+++LG P
Sbjct:  316 SRFYRSPEVLLG-TPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMSKIVEVLGIP 372          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CSK2A_SCHPO (Casein kinase II subunit alpha OS=Schizosaccharomyces pombe GN=cka1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQ-PLFPGESGVDQLVEIIKILGTPTR----EEIKCMNPNYTEFKFPQIKAHPWHKIFHK----RMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLR 393
            SRY++ PEL+    EY  ++D+WS G + A L+  +   F G    DQLV+I K+LGT       ++ + +     +    Q     W+   ++        EA+DL++RLL+Y    R T  EA AHP+F  L+
Sbjct:  198 SRYFKGPELLVDFREYDYSLDIWSFGVMFAALIFKKDTFFRGRDNYDQLVKIAKVLGTDELFAYVQKYQIVLDRQYDNILGQYPKRDWYSFVNRDNRSLANDEAIDLLNRLLRYDHQERLTCQEAMAHPYFQVLK 332          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CDC72_ENCCU (Probable cell division control protein 7 homolog 2 OS=Encephalitozoon cuniculi GN=CDC7-2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 46/144 (31.94%), Postives = 66/144 (45.83%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQ-PLFPGESGVDQLVEIIKILGTPT------------REEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTC 408
            +R +RAPE++F     T AIDMWS+G +   +L  Q P F     +D +VEI  I G               R  I  +      F+      +PW ++       +  DL+ R+L    S R TA +A +HPFFDDL+    C
Sbjct:  212 TRGFRAPEVLFRCQRQTGAIDMWSVGVIFLTILTTQYPFFYSSDDIDSIVEIATIFGHAEMRKAAKFYGRVWRSNIDSIPEERIPFETIVESLNPWAEV-----GSDGYDLLYRMLDLCSSSRITASDALSHPFFDDLKTHENC 350          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CDKL3_MOUSE (Cyclin-dependent kinase-like 3 OS=Mus musculus GN=Cdkl3 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 1
Query:    7 FFCSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILG--TPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPP---EALDLVSRLLQYSPSLRCTALEACAHPFF 381
            +  +R+YRAPEL+   T Y   +D+W++GC++ E+  G P  P  S +D L +I+  +G  TP    I   +P +     PQ++ HP  K   K+ P       D+V   LQ  P+ R ++ +   H +F
Sbjct:  160 YVATRWYRAPELVLKDTSYGKPVDIWALGCMIIEMATGHPFLPSSSDLDLLHKIVLKVGNLTPHLHNIFSKSPIFAGVVLPQVQ-HP--KTARKKYPKLNGLLADIVHACLQIDPAERTSSTDLLRHDYF 286          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: MNB_DROME (Serine/threonine-protein kinase minibrain OS=Drosophila melanogaster GN=mnb PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 51/168 (30.36%), Postives = 75/168 (44.64%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTR--------------------EEIKCMNPNYTEFKFP-QIKAH-----------------PWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNT 405
            SR+YR+PE++ G  +Y  AIDMWS+GC+L E+  G+PLF G + VDQ+ +I+++LG P +                      +   N N  ++K P   K H                 P H +       +  DL+ R+L + P  R T   A  H FF    D  T
Sbjct:  329 SRFYRSPEVLLGI-QYDLAIDMWSLGCILVEMHTGEPLFSGCNEVDQMNKIVEVLGMPPKYLLDQAHKTRKFFDKIVADGSYVLKKNQNGRKYKPPGSRKLHDILGVETGGPGGRRLDEPGHSVSDYL---KFKDLILRMLDFDPKTRVTPYYALQHNFFKRTADEAT 492          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: DYR1A_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Homo sapiens GN=DYRK1A PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 51/171 (29.82%), Postives = 73/171 (42.69%), Query Frame = 1
Query:   16 SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWH----------------KIFHKRMPPEA---------------------LDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPN 417
            SR+YR+PE++ G   Y  AIDMWS+GC+L E+  G+PLF G + VDQ+ +I+++LG P    I    P   +F F ++    W+                +  H  +  E                       DL+ R+L Y P  R     A  H FF    D  T   N
Sbjct:  324 SRFYRSPEVLLGMP-YDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP-AHILDQAPKARKF-FEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTADEGTNTSN 491          
BLAST of FC925490 vs. ExPASy Swiss-Prot
Match: CDK8_MOUSE (Cell division protein kinase 8 OS=Mus musculus GN=Cdk8 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 52/147 (35.37%), Postives = 71/147 (48.30%), Query Frame = 1
Query:   22 YYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLF---------PGESGVDQLVEIIKILGTPTR---EEIKCMNPNYTEFK---------FPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDP 399
            +YRAPEL+ GA  YT AID+W+IGC+ AELL  +P+F               DQL  I  ++G P     E+IK M  + T  K            IK    HK+   +   +A  L+ +LL   P  R T+ +A   P+F  L DP
Sbjct:  198 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKV---KPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF--LEDP 339          
The following BLAST results are available for this feature:
BLAST of FC925490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CTK1_ENCCU2.269e-1231.71Probable CTD kinase subunit alpha homolog OS=Encep... [more]
CSK2A_ENCCU2.963e-1236.15Probable casein kinase II subunit alpha homolog OS... [more]
CDC71_ENCCU2.963e-1232.64Probable cell division control protein 7 homolog 1... [more]
DYR1A_XENLA3.870e-1253.45Dual specificity tyrosine-phosphorylation-regulate... [more]
CSK2A_SCHPO3.870e-1232.59Casein kinase II subunit alpha OS=Schizosaccharomy... [more]
CDC72_ENCCU3.870e-1231.94Probable cell division control protein 7 homolog 2... [more]
CDKL3_MOUSE5.055e-1231.54Cyclin-dependent kinase-like 3 OS=Mus musculus GN=... [more]
MNB_DROME8.622e-1230.36Serine/threonine-protein kinase minibrain OS=Droso... [more]
DYR1A_HUMAN8.622e-1229.82Dual specificity tyrosine-phosphorylation-regulate... [more]
CDK8_MOUSE8.622e-1235.37Cell division protein kinase 8 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YJ02FM1 TF Citrus clementina cDNA clone KN0AAP3YJ02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925490 ID=FC925490; Name=FC925490; organism=Citrus clementina; type=EST; length=750bp
ATATCGTTTTTCTGCTCAAGATATTACAGGGCCCCGGAACTTATATTTGG
GGCTACAGAATACACAACTGCCATTGATATGTGGTCCATTGGATGTGTCT
TGGCTGAGCTTCTTCTTGGACAGCCTTTATTTCCTGGGGAAAGTGGAGTT
GACCAGCTCGTCGAAATCATTAAGATTCTGGGAACACCAACAAGAGAAGA
AATTAAGTGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAAATTA
AAGCTCATCCATGGCATAAGATATTTCACAAACGAATGCCCCCTGAAGCA
CTGGATCTTGTCTCAAGGTTGCTTCAGTATTCACCAAGCCTACGATGCAC
TGCTTTGGAGGCATGTGCACACCCCTTCTTTGATGATTTGAGAGACCCCA
ATACTTGTTTGCCAAATGGGCGACCCCTACCTACTCTTTTCAATTTCACT
GCTCAAGAATTGGCTGGTGCCTCTAATGAATTGCGACAACGTCTTATCCC
GGAGCACGCAAGGAAATGATTTGATGACTGAGATGGATCCATATGCAATA
TAAATCAATTTTTGGATGCTTAGGTATGCCACAAGCCATTGTTGCCCTAC
AGGGCAACCGATTTTTTTCCCCTTCACCAATGAGTTGGTTCGTGGCTGGG
AGGCTGCTCAAGGATTTTTATGATGAATCCGCTGATGGGAGTGAGTTGTG
GATGGAAAAAGGTTTGACATTTATTTTCCAATTACCAATGTTTAATTTGT
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