FC925491

Overview
NameFC925491
Unique NameFC925491
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA2_SCHPO (60S acidic ribosomal protein P2-alpha OS=Schizosaccharomyces pombe GN=rpp201 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            MK +AAY L  +GG  +PSA D++++L +VG EA+ ERIE L++E+ GKDI ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA2_CLAHE (60S acidic ribosomal protein P2 OS=Cladosporium herbarum GN=CLAH5 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.253e-13
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            MK +AA+ L  L GN++PSA+D++ +L SVG +AD+ER+  LL E++GKDI ELI+SG EKL
Sbjct:    1 MKYLAAFLLLGLAGNSSPSAEDIKTVLSSVGIDADEERLSSLLKELEGKDINELISSGSEKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA2_RAT (60S acidic ribosomal protein P2 OS=Rattus norvegicus GN=Rplp2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.792e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            M+ +A+Y LA LGGN+NPSA D++ IL SVG EADDER+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSNPSAKDIKKILDSVGIEADDERLNKVISELNGKNIEDVIAQGVGKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA4_SCHPO (60S acidic ribosomal protein P2-beta OS=Schizosaccharomyces pombe GN=rpp202 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            MK +AAY L  +GG  +PSA D++++L +VG EA+ ER+E L+SE+ GK+I ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA6_SCHPO (60S acidic ribosomal protein P2-C OS=Schizosaccharomyces pombe GN=rpp203 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            MK +AAY L  +GG  +PSA D++++L +VG E++ ER+E L+ E+ GKDI ELIA+G EKL
Sbjct:    1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA2_PODAN (60S acidic ribosomal protein P2 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            MK +AAY L  LGG A PSA D++ +L SVG EAD +R++ L+SE++GKD+ ELIA G  KL
Sbjct:    1 MKHLAAYLLLTLGGKATPSAADVKAVLESVGIEADSDRLDKLISELEGKDVNELIAEGSSKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA2_FUSCU (60S acidic ribosomal protein P2 OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            MK +AAY L  LGGN +PSA D++ +L SVG +AD++R+  L+SE++GKDI +LIA G EKL
Sbjct:    1 MKHLAAYLLLGLGGNTSPSAADVKAVLTSVGIDADEDRLNKLISELEGKDIQQLIAEGSEKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA2_HORSE (60S acidic ribosomal protein P2 OS=Equus caballus GN=RPLP2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            M+ +A+Y LA LGGN +PSA D++ IL SVG EADD+R++ ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNTSPSAKDIKKILDSVGIEADDDRLDKVISELNGKNIEDVIAQGIGKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA2_MOUSE (60S acidic ribosomal protein P2 OS=Mus musculus GN=Rplp2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            M+ +A+Y LA LGGN++PSA D++ IL SVG EADD+R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGVGKL 62          
BLAST of FC925491 vs. ExPASy Swiss-Prot
Match: RLA2_HUMAN (60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   69 MKVIAAYFLAVLGGNANPSADDLQNILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 254
            M+ +A+Y LA LGGN++PSA D++ IL SVG EADD+R+  ++SE+ GK+I ++IA G  KL
Sbjct:    1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKL 62          
The following BLAST results are available for this feature:
BLAST of FC925491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RLA2_SCHPO1.253e-1356.4560S acidic ribosomal protein P2-alpha OS=Schizosac... [more]
RLA2_CLAHE1.253e-1356.4560S acidic ribosomal protein P2 OS=Cladosporium he... [more]
RLA2_RAT2.792e-1356.4560S acidic ribosomal protein P2 OS=Rattus norvegic... [more]
RLA4_SCHPO3.647e-1354.8460S acidic ribosomal protein P2-beta OS=Schizosacc... [more]
RLA6_SCHPO6.221e-1353.2360S acidic ribosomal protein P2-C OS=Schizosacchar... [more]
RLA2_PODAN1.061e-1256.4560S acidic ribosomal protein P2 OS=Podospora anser... [more]
RLA2_FUSCU1.386e-1256.4560S acidic ribosomal protein P2 OS=Fusarium culmor... [more]
RLA2_HORSE1.810e-1253.2360S acidic ribosomal protein P2 OS=Equus caballus ... [more]
RLA2_MOUSE2.364e-1253.2360S acidic ribosomal protein P2 OS=Mus musculus GN... [more]
RLA2_HUMAN2.364e-1253.2360S acidic ribosomal protein P2 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YF12FM1 TF Citrus clementina cDNA clone KN0AAP11YF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925491 ID=FC925491; Name=FC925491; organism=Citrus clementina; type=EST; length=379bp
GGGCTCACACACTCCCCTTTGAGAGAAAAGTCGATCTTTATCGTCTCACC
TCTCTGCTATAAGCAAAAATGAAGGTGATCGCTGCTTATTTTCTCGCCGT
TTTGGGTGGCAACGCCAACCCATCGGCCGATGACTTGCAGAACATTCTTG
GATCAGTTGGAGCTGAAGCTGATGATGAGAGAATAGAGTTTCTCTTATCA
GAAGTCAAGGGCAAGGATATTACCGAGCTAATTGCATCCGGAAGGGAGAA
GTTGGCATCAGTGCCATCAGGTGGTGGTGTTGCTGTTGCTGCAGCAGCAC
CTGCTGCAGGTGCTGCTGCTGCTCCAGCTGCTGAGGCTAAGAAAGAGGAG
AAGGTCGAGGAGAAGGAAGAATCTGATGA
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