FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURPP (Glycine dehydrogenase [decarboxylating] OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.398e-46
Identity = 91/178 (51.12%), Postives = 123/178 (69.10%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH      DQ  M E +G  +  +LIDA +PK+IR  +++    F +  +E++ +  +++LA  N+V++S+IG GYYN H P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ MI DLTGL +SNASLLDE TAAAEAM +   + K K   F +A +
Sbjct:   15 LSLAALEVHDAFAERHIGPDAADQHAMLEALGFASRAALIDAVIPKTIRRTETLPLGPFTQPKSEAEALAALRELADKNQVFRSYIGQGYYNAHTPTVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMIVDLTGLAISNASLLDEATAAAEAMTLLQRVGKPKSNVFFVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_AGRT5 (Glycine dehydrogenase [decarboxylating] OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.398e-46
Identity = 93/171 (54.39%), Postives = 120/171 (70.18%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +P D   RRH   +P + A+M ++VG  +LD+LIDATVP SIR        +   LTE + ++ +++ A+ N+V  S IG GYY T  PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ DLTGL ++NASLLDE TAAAEAMAMC  + K K   F + +N
Sbjct:   13 QPYDFANRRHIGPSPSEMAEMLKVVGYKSLDALIDATVPSSIR--QKVPLTWGAALTEREALDRLRETANKNQVLTSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNYQTMVCDLTGLDVANASLLDEATAAAEAMAMCQRVAKSKATAFFVDAN 181          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RALEJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia eutropha (strain JMP134) GN=gcvP PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.091e-45
Identity = 92/173 (53.18%), Postives = 118/173 (68.21%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRI-DSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            L+  D FA RH      +Q  M +++G D+  +LIDA +P++IR  D M   +F E L E   +  ++KLA  NKV KSFIG GYYNT  P V+LRNI ENPAWYT YTPYQ EI+QGRLE++LNFQ M+ DLTGL ++NAS+LDEGTAAAEAM +   + K    TF +A +
Sbjct:   20 LEARDAFAARHIGPDTPEQQHMLKVLGYDSRAALIDAVIPEAIRRRDGMPMGEFTEPLPEEAALAKLRKLAGKNKVLKSFIGQGYYNTLTPAVVLRNIFENPAWYTAYTPYQPEISQGRLEAMLNFQQMVTDLTGLDIANASMLDEGTAAAEAMTLLQRVNKHASNTFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURXL (Glycine dehydrogenase [decarboxylating] OS=Burkholderia xenovorans (strain LB400) GN=gcvP PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.091e-45
Identity = 92/178 (51.69%), Postives = 122/178 (68.54%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH      DQ  M E +G  +  +LIDA +PK+IR  + +    F +  +E++ +  +++LA  N+V++S+IG GYYN H P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ MI DLTGL +SNASLLDE TAAAEAM +   I K K   F +A +
Sbjct:   15 LSLAALEVHDAFAERHIGPDSADQQAMLEALGFASRAALIDAVIPKTIRRTEPLPLGPFAQPKSEAEALATLRELADRNQVFRSYIGQGYYNAHTPTVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMIVDLTGLAISNASLLDEATAAAEAMTLLQRIGKPKSNVFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_DINSH (Glycine dehydrogenase [decarboxylating] OS=Dinoroseobacter shibae (strain DFL 12) GN=gcvP PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.431e-45
Identity = 94/179 (52.51%), Postives = 122/179 (68.16%), Query Frame = 3
Query:  309 GISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRI-DSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            G S+    P D   RRH   +P++  +M   +G+ +L++LI+  +P+ IR  D + F      L+E   +  M++LA  N V  S IG GY+ TH PPVILRNI+ENPAWYT YTPYQ EI+QGRLE+LLNFQTM+ADLTGLP++NASLLDEGTAAAEAMAM     K K + F +A +
Sbjct:    2 GFSLTDYAPYDFANRRHIGPSPKEMGQMLATLGVPSLEALINEALPEGIRRRDPLAFGP---ALSERDTLHRMRELADKNTVLTSLIGQGYHGTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMMADLTGLPIANASLLDEGTAAAEAMAMAQRASKSKARGFFVAED 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_SYNY3 (Glycine dehydrogenase [decarboxylating] OS=Synechocystis sp. (strain PCC 6803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.175e-45
Identity = 92/174 (52.87%), Postives = 119/174 (68.39%), Query Frame = 3
Query:  321 EALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            E L P+D+F  RH      +Q +M + +G D L  LID  VP +IR    +  +     +E   I  ++ +AS N+V++S+IGMGYY+T  PPVI RNI+ENP WYT YTPYQAEIAQGRLE+LLNFQTM+ DLTGL ++NASLLDEGTAAAEAMA+   + K K   F +A +
Sbjct:   25 EKLAPADSFLDRHLGPGETEQRQMLQTLGFDTLGDLIDQAVPPAIRFP--RSLQLPASQSEYGAIAQLKSIASKNQVFRSYIGMGYYDTITPPVIQRNILENPGWYTAYTPYQAEIAQGRLEALLNFQTMVMDLTGLEIANASLLDEGTAAAEAMALSYGVSKSKANAFFVAQD 196          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_HAHCH (Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis (strain KCTC 2396) GN=gcvP PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.416e-45
Identity = 95/183 (51.91%), Postives = 124/183 (67.76%), Query Frame = 3
Query:  297 SQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASN 842
            S TR    E L+  D F  RH      ++  M   +G+ ++++LI  TVP++IRI   +  + D   TE+Q +  ++  A  NKV+K++IGMGYYNT  P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQTMI DLTG+ M+NASLLDEGTAAAEAM MC  +  K K   F +A +
Sbjct:    2 SDTRETLAE-LEQRDAFIGRHIGPDEAEKTAMLNALGVADMETLISKTVPETIRIK--EGLELDGPCTEAQALAELKAFAERNKVFKTYIGMGYYNTLTPTVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQTMIGDLTGMEMANASLLDEGTAAAEAMTMCRRVNGKNKSNVFFVAED 181          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURTA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gcvP PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.416e-45
Identity = 89/178 (50.00%), Postives = 123/178 (69.10%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G     +LIDA +P SIR  +++    F + L+E++ +  +++LA  N+V++S+IG GYY+TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +   + K +   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFATRAALIDAVIPASIRRAETLPLGPFAQPLSEAEALAALRELADKNQVFRSYIGQGYYDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLEISNASLLDEATAAAEAMTLLQRVGKPQSNVFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_ROSDO (Glycine dehydrogenase [decarboxylating] OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.074e-45
Identity = 88/167 (52.69%), Postives = 117/167 (70.06%), Query Frame = 3
Query:  333 PSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            P D   RRH   +P +  +M E+ G  NLD+L+D T+P +IR    +   F + ++E +++EH++++AS N+V  S IG GYY T  PP I RNI+ENPAWYT YTPYQ EI+QGRLE+LLNFQTM++DLTGL ++NASLLDE TA AEAM M   + K K K F +
Sbjct:   10 PYDFANRRHIGPSPAEMTQMLEVTGAANLDALMDDTLPAAIR--QKEPLAFGKAMSEREVLEHLRRVASKNQVLTSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVSDLTGLEVANASLLDEATACAEAMTMAQRVSKSKSKAFFV 174          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_VIBVY (Glycine dehydrogenase [decarboxylating] OS=Vibrio vulnificus (strain YJ016) GN=gcvP PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 9.238e-45
Identity = 88/175 (50.29%), Postives = 118/175 (67.43%), Query Frame = 3
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +++L     F  RHN     DQ KM   +  ++LD+LI  TVP  IR++  K  +  E  +E+ M+  ++K A +N+V ++FIG GYYNT  P VILRN++ENP WYT YTPYQ EI+QGRLESLLN+Q M+ DLTG+ ++NASLLDE TAAAEAM +C    K K K F +A +
Sbjct:    5 LQSLNTQHEFVGRHNGPNHADQQKMLSTINAESLDALIAQTVPAQIRLE--KPMQLAEAQSEADMLASIKKFADLNQVKRTFIGQGYYNTFTPNVILRNVLENPGWYTAYTPYQPEISQGRLESLLNYQQMVMDLTGMDIANASLLDEATAAAEAMTLCQRAGKSKSKVFFVADD 177          
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP_BURPP6.398e-4651.12Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_AGRT56.398e-4654.39Glycine dehydrogenase [decarboxylating] OS=Agrobac... [more]
GCSP_RALEJ1.091e-4553.18Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_BURXL1.091e-4551.69Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_DINSH2.431e-4552.51Glycine dehydrogenase [decarboxylating] OS=Dinoros... [more]
GCSP_SYNY33.175e-4552.87Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_HAHCH5.416e-4551.91Glycine dehydrogenase [decarboxylating] OS=Hahella... [more]
GCSP_BURTA5.416e-4550.00Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_ROSDO7.074e-4552.69Glycine dehydrogenase [decarboxylating] OS=Roseoba... [more]
GCSP_VIBVY9.238e-4550.29Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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