FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURCC (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G  +  +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GY++TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +     K K   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFASRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYHDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLAISNASLLDEATAAAEAMTLLQRTGKPKSNVFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURCA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain AU 1054) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43
Identity = 88/178 (49.44%), Postives = 121/178 (67.98%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G  +  +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GY++TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +     K K   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFASRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYHDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLAISNASLLDEATAAAEAMTLLQRTGKPKSNVFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_XYLFT (Glycine dehydrogenase [decarboxylating] OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.742e-43
Identity = 88/173 (50.87%), Postives = 119/173 (68.79%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            S+  L+    F  RH      + A+M  +VG D+L+SL DA VP+ IR  S       +G+TE + +  ++ +A+ N+V++SFIG GYY TH P VILRNI+ENPAWYT YTPYQAEI+QGR+E+L+NFQTM ADLTG+ ++NASLLDE TAAAEAM++     K +   F +
Sbjct:   20 SLRDLEYHGAFVERHIGPNDVEIAQMLRVVGYDSLESLTDAIVPEKIR--STVALDLPKGITEEEALAKIRVIANKNRVFRSFIGQGYYGTHTPKVILRNILENPAWYTAYTPYQAEISQGRMEALINFQTMCADLTGMEIANASLLDEATAAAEAMSLAKRSAKSRSDLFFV 190          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_XYLFA (Glycine dehydrogenase [decarboxylating] OS=Xylella fastidiosa GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.742e-43
Identity = 87/173 (50.29%), Postives = 119/173 (68.79%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            S+  L+    F  RH      + A+M  +VG D+L+SL DA VP+ IR  S       +G+TE + +  ++ +A+ N+V++SFIG GYY TH P VILRN++ENPAWYT YTPYQAEI+QGR+E+L+NFQTM ADLTG+ ++NASLLDE TAAAEAM++     K +   F +
Sbjct:   20 SLRDLEYQGAFVERHIGPNDVEIAQMLRVVGYDSLESLTDAIVPEKIR--STVALDLPKGITEEEALAKIRVIANKNRVFRSFIGQGYYGTHTPKVILRNVLENPAWYTAYTPYQAEISQGRMEALINFQTMCADLTGMEIANASLLDEATAAAEAMSLAKRSAKSRSDLFFV 190          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_VIBFM (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain MJ11) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.276e-43
Identity = 85/175 (48.57%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            ++ L   + F RRHN     +   M   +G + L  LI+ TVP SIR+      +   GL+E+ M+  ++++A  N +  S+IG GYYNTH P VILRN++ENP WYT YTPYQ EI+QGRLE+LLN+Q M+ DLTGL ++NASLLDE TAAAEAM +C    K K   F +A +
Sbjct:    5 LQQLGTDNEFIRRHNGPASSEHQHMLNTIGAETLQQLIEETVPSSIRLPQPM--QLPHGLSENAMLAELKQIAQQNTLNTSYIGQGYYNTHTPNVILRNVLENPGWYTAYTPYQPEISQGRLEALLNYQQMVMDLTGLEIANASLLDEATAAAEAMTLCKRGGKSKSNIFFVADD 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_VIBF1 (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.276e-43
Identity = 85/175 (48.57%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            ++ L   + F RRHN     +   M   +G + L  LI+ TVP SIR+      +   GL+E+ M+  ++++A  N +  S+IG GYYNTH P VILRN++ENP WYT YTPYQ EI+QGRLE+LLN+Q M+ DLTGL ++NASLLDE TAAAEAM +C    K K   F +A +
Sbjct:    5 LQQLGTDNEFIRRHNGPASSEHQHMLNTIGAETLQQLIEETVPSSIRLPQPM--QLPHGLSENAMLAELKQIAQQNTLNTSYIGQGYYNTHTPNVILRNVLENPGWYTAYTPYQPEISQGRLEALLNYQQMVMDLTGLEIANASLLDEATAAAEAMTLCKRGGKSKSNLFFVADD 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_SINMW (Glycine dehydrogenase [decarboxylating] OS=Sinorhizobium medicae (strain WSM419) GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.972e-43
Identity = 90/171 (52.63%), Postives = 117/171 (68.42%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            KP D   RRH   +P +  +M ++VG  +LD+LID TVP SIR  +     +   +TE + ++ +++ A+ N+   S IG GYY T  PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLNFQTM+ DLTGL ++NASLLDE TAAAEAMA+   + K K K F +  N
Sbjct:   13 KPYDFANRRHIGPSPAEMDEMLKVVGYPSLDALIDDTVPPSIRQQTPL--AWGAPMTEREALDKLRETANRNRKVVSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVCDLTGLDVANASLLDEATAAAEAMAIAERVAKSKAKAFFVDEN 181          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHOS5 (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.972e-43
Identity = 89/162 (54.94%), Postives = 113/162 (69.75%), Query Frame = 3
Query:  351 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG-LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            RRH   +P +  +M  +VG+ +LD LI+ TVP SIR D       D   L E ++++ M+++A+ N+V  S IG GYY T  PP I RNI+ENPAWYT YTPYQ EIAQGRLE+LLN+QTM+ADLTGLP++NASLLDE TAAAEAM M     K K + F +
Sbjct:   16 RRHIGPSPSEMEEMLRVVGVSSLDQLIEETVPASIRQDQ----PLDWAPLAEHELLQKMREVAAKNRVMVSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEIAQGRLEALLNYQTMVADLTGLPVANASLLDEATAAAEAMTMAERASKSKARAFFV 173          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURVG (Glycine dehydrogenase [decarboxylating] OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.972e-43
Identity = 87/178 (48.88%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G  +  +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GYY++H P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ DLTGL +SNASLLDE TAAAEAM +     K K   F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFASRAALIDAVIPASIRRAEALPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYYDSHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVVDLTGLAISNASLLDEATAAAEAMTLLQRTGKPKSNVFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHIEC (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.881e-43
Identity = 87/168 (51.79%), Postives = 118/168 (70.24%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            +P D   RRH   +P + A+M +++G ++L+ LIDAT+P +IR  +     +   +TE + ++ +++ A+ NKV  S IG GYY T  PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ DLTGL ++NASLLDE TAAAE MAM   + K K K F +
Sbjct:   13 QPYDFANRRHIGPSPAEMAEMLKVIGYNSLEGLIDATLPPAIRQKAPLV--WGAPMTEREALDKLRETANKNKVLVSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNYQTMVCDLTGLDIANASLLDEATAAAEGMAMAERVAKSKAKAFFV 178          
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP_BURCC1.334e-4349.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCA1.334e-4349.44Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_XYLFT1.742e-4350.87Glycine dehydrogenase [decarboxylating] OS=Xylella... [more]
GCSP_XYLFA1.742e-4350.29Glycine dehydrogenase [decarboxylating] OS=Xylella... [more]
GCSP_VIBFM2.276e-4348.57Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBF12.276e-4348.57Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_SINMW2.972e-4352.63Glycine dehydrogenase [decarboxylating] OS=Sinorhi... [more]
GCSP_RHOS52.972e-4354.94Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_BURVG2.972e-4348.88Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_RHIEC3.881e-4351.79Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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