FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHIE6 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CIAT 652) GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.881e-43
Identity = 87/168 (51.79%), Postives = 116/168 (69.05%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            +P D   RRH   +P +   M +++G ++LD LIDAT+P +IR  +     +   +TE + ++ +++ A+ NKV  S IG GYY T  PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ DLTGL ++NASLLDE TAAAE MAM   + K K K F +
Sbjct:   13 QPYDFANRRHIGPSPAEMTDMLKVIGFNSLDGLIDATLPPTIRQKAPLV--WGAPMTEREALDKLRETANKNKVLVSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNYQTMVCDLTGLDVANASLLDEATAAAEGMAMAERVSKSKAKAFFV 178          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_DEIRA (Glycine dehydrogenase [decarboxylating] OS=Deinococcus radiodurans GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.881e-43
Identity = 88/177 (49.72%), Postives = 120/177 (67.80%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-KKTFIIASN 842
            S+  L  ++ F RRH   +  +QA+M  ++G+ +LD L   T+P +I+ D    +    G+TE+Q +  ++ +A  NKV++S+IGMGY  T VPPVILRN++ENP WYT YTPYQAEI+QGRLE LLNFQ  + D+TG+P+SNASLLDE TAAAEAM +     K K    F +A N
Sbjct:    4 SLSDLLQTNDFTRRHIGPSEAEQAEMLGVLGVSSLDELTQTTLPAAIQFDGELHT--GPGMTEAQALAELKAVAQKNKVFRSYIGMGYAGTDVPPVILRNMLENPGWYTAYTPYQAEISQGRLEMLLNFQQTVQDMTGMPVSNASLLDEATAAAEAMTLAKRQSKNKGSNVFFVADN 178          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BORPD (Glycine dehydrogenase [decarboxylating] OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.881e-43
Identity = 86/173 (49.71%), Postives = 116/173 (67.05%), Query Frame = 3
Query:  324 ALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            AL P   F  RH   T  DQ KM   +G  +LD+L+   VP +IR  S          +ES ++  ++ +A  N++Y+++IG GYY TH P V+LRN++ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ADLTGL +SNASLLDEGTAAAEAM +     K   + F ++++
Sbjct:    4 ALDPHTDFIPRHIGPTAADQEKMLAAIGCGSLDALLQEVVPPAIR--SQGPLALPASRSESDVLADLKAVAGRNRIYRNYIGQGYYGTHTPNVVLRNVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRGSKSASQVFFVSAH 174          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_AGRRK (Glycine dehydrogenase [decarboxylating] OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=gcvP PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.881e-43
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            +P D   RRH   +P + A M +++G  +LD LIDAT+P SIR  +     +   +TE + ++ +++ A+ NKV  S IG GYY T  PPVI R I+ENPAWYT YTPYQ EI+QGRLE+LLN+QTMI DLTGL ++NASLLDE TAAAE MAM   + K K K F +
Sbjct:   13 QPYDFANRRHIGPSPSEMADMLKVIGYSSLDKLIDATLPPSIRQKAPLV--WGAPMTEREALDKLRETANKNKVLVSLIGQGYYGTITPPVIQRTILENPAWYTAYTPYQPEISQGRLEALLNYQTMICDLTGLDVANASLLDEATAAAEGMAMAERVAKSKAKAFFV 178          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_XANCP (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. campestris GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 87/173 (50.29%), Postives = 117/173 (67.63%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            S+  L+    F  RH      + A+M  +VG D+LD++ DA VP +I+  S       + +TE + +  ++ +AS N+V ++FIG GYY TH P VILRNI+ENPAWYT YTPYQAEI+QGR+E+L+NFQTM ADLTG+ ++NASLLDE TAAAEAM +     K K  TF +
Sbjct:    7 SLRDLEHHSAFVERHIGPNDAEIAQMLGVVGHDSLDAMTDAIVPSNIK--SPAALALPDAITEEEALARIRAIASKNQVQRTFIGQGYYGTHTPKVILRNILENPAWYTAYTPYQAEISQGRMEALINFQTMCADLTGMQIANASLLDEATAAAEAMTLAKRSAKSKSDTFFV 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_XANC8 (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 87/173 (50.29%), Postives = 117/173 (67.63%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            S+  L+    F  RH      + A+M  +VG D+LD++ DA VP +I+  S       + +TE + +  ++ +AS N+V ++FIG GYY TH P VILRNI+ENPAWYT YTPYQAEI+QGR+E+L+NFQTM ADLTG+ ++NASLLDE TAAAEAM +     K K  TF +
Sbjct:    7 SLRDLEHHSAFVERHIGPNDAEIAQMLGVVGHDSLDAMTDAIVPSNIK--SPAALALPDAITEEEALARIRAIASKNQVQRTFIGQGYYGTHTPKVILRNILENPAWYTAYTPYQAEISQGRMEALINFQTMCADLTGMQIANASLLDEATAAAEAMTLAKRSAKSKSDTFFV 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_VARPS (Glycine dehydrogenase [decarboxylating] OS=Variovorax paradoxus (strain S110) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 84/176 (47.73%), Postives = 119/176 (67.61%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            S++ L+ ++ F  RH      D+A+M  ++G +    LID  VP +IR    K  +     TE+  +  ++ +A+ NKV++SFIG GYY TH P VILRN++ENPAWYT YTPYQAEI+QGR+E+LLNFQTM+ DLTG+ ++NAS+LDE TAAAEAM +     K K   F+++ +
Sbjct:    8 SLQQLENAEEFLARHIGIDAADEARMLPVIGSETRAELIDGIVPAAIR--RAKPMRLPAPATEADALAELKAIAAKNKVFRSFIGQGYYGTHTPGVILRNVLENPAWYTAYTPYQAEISQGRMEALLNFQTMVCDLTGMAIANASMLDEATAAAEAMTLAKRSVKSKSNVFLVSGD 181          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 91/174 (52.30%), Postives = 121/174 (69.54%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI--QKGKKKTFIIASN 842
            L+    F  RH   TP D  KM  L+G  +L  LI+A +P  IR+   +     EGL+E+  ++ ++ LA  N+V++S+IGMGYYN   P VI RNI+ENP WYTQYTPYQAEIAQGRLE+LLNFQT+++DLTGL ++NASLLDE TAAAEAM +  N   Q+G  + F++A +
Sbjct:   13 LETDAEFVARHIGITPSDLPKMLSLLGYGSLKELINAVIPPEIRLQ--RPLALSEGLSETAALQKLRTLAQQNQVWRSYIGMGYYNCITPSVIQRNILENPGWYTQYTPYQAEIAQGRLEALLNFQTLVSDLTGLAIANASLLDEATAAAEAMTLSFNACRQRGANR-FLVAQD 183          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_STRGG (Glycine dehydrogenase [decarboxylating] OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 92/176 (52.27%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  306 RGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            R   +  L+    F +RH     E QAKM   VG  +LD L  A VP  I+  S +        TE++++  ++ LA  N+V    IG+GYY T  PPVILRN+MENPAWYT YTPYQ EI+QGRLE+LLNFQTM+A+LTGLP S ASLLDEGTAAAEAMA+   + K KK  F++
Sbjct:    4 RRTPLSQLEQGIPFEQRHIGPDAEAQAKMLAQVGYGSLDELTAAAVPDVIK--SAEALNLPSARTEAEVLAELRSLADRNQVLAPMIGLGYYGTFTPPVILRNVMENPAWYTAYTPYQPEISQGRLEALLNFQTMVAELTGLPTSGASLLDEGTAAAEAMALSRRVGKVKKGVFLV 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHIL3 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 88/168 (52.38%), Postives = 116/168 (69.05%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            +P D   RRH   +P +   M +++G ++LD LIDAT+P SIR  +     +   +TE + ++ +++ A+ NKV  S IG GYY T  PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLN+QTMI DLTGL ++NASLLDE TAAAE MA+   + K K K F +
Sbjct:   13 QPYDFANRRHIGPSPAEMTDMLKVIGYNSLDGLIDATLPPSIRQKAPLV--WGAPMTEREALDKLRETANKNKVLVSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNYQTMICDLTGLDVANASLLDEATAAAEGMAIAERVAKSKAKAFFV 178          
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP_RHIE63.881e-4351.79Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_DEIRA3.881e-4349.72Glycine dehydrogenase [decarboxylating] OS=Deinoco... [more]
GCSP_BORPD3.881e-4349.71Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_AGRRK3.881e-4352.98Glycine dehydrogenase [decarboxylating] OS=Agrobac... [more]
GCSP_XANCP6.621e-4350.29Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_XANC86.621e-4350.29Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_VARPS6.621e-4347.73Glycine dehydrogenase [decarboxylating] OS=Variovo... [more]
GCSP_THEEB6.621e-4352.30Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_STRGG6.621e-4352.27Glycine dehydrogenase [decarboxylating] OS=Strepto... [more]
GCSP_RHIL36.621e-4352.38Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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