FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_PSYIN (Glycine dehydrogenase [decarboxylating] OS=Psychromonas ingrahamii (strain 37) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 87/173 (50.29%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIA 836
            ++ L  S  FA RHN +    Q KM E +G+ +++ LID TVP +IR+      K  E  +ES  +  ++ +A  N V +SFIG GYYNT +P VILRN++ENP WYT YTPYQ EI+QGRLESLLN+Q M+ DLT + ++NASLLDE TAAAE+M +C    K K   F +A
Sbjct:    7 LDLLSDSKEFATRHNGSGAAQQKKMLETIGVQSIEQLIDQTVPAAIRLPEKM--KLAEPQSESMTLASLKAIAEKNIVNRSFIGQGYYNTLLPNVILRNVLENPGWYTAYTPYQPEISQGRLESLLNYQQMVMDLTAMEIANASLLDEATAAAESMTLCKRAGKSKSLAFFVA 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_PSESM (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. tomato GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 85/172 (49.42%), Postives = 118/172 (68.60%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            L  ++ F  RH      D+  M   +G D++++L D+ +P+SI+  S+       G +E+  +  ++ +AS N+++K++IG GYYNTH P  ILRN++ENPAWYT YTPYQ EI+QGRLESLLNFQT+I+DLTGLP++NASLLDE TAAAEAM  C  + K K      AS+
Sbjct:    7 LTTANEFIARHIGPRAADELAMLHTLGFDSIEALSDSVIPESIKGTSVL--NLPAGQSEADALASIKAIASKNQLFKTYIGQGYYNTHTPAPILRNLLENPAWYTAYTPYQPEISQGRLESLLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSQQFFASS 176          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_PSEHT (Glycine dehydrogenase [decarboxylating] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 90/177 (50.85%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-KTFIIASN 842
            S+E L+ +  F RRH   +P   + M   + + +++ LI  TVP  IR++        E  TE + + +++ +AS NKV+KS+IG GY+ THVP VILRN++ENP WYT YTPYQ EIAQGRLESLLNFQTM  DLTGL +++ASLLDE TAAAEAM +   + K KK   F IA +
Sbjct:    6 SLEQLEQTQDFIRRHIGPSPAQVSDMLSALEVSSVEELIGQTVPAGIRLEQPL--TVGESRTEVETLSYLKSVASKNKVFKSYIGQGYHPTHVPHVILRNVLENPGWYTAYTPYQPEIAQGRLESLLNFQTMTLDLTGLDLASASLLDESTAAAEAMGLAKRVSKAKKANAFFIADD 180          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURCM (Glycine dehydrogenase [decarboxylating] OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 87/178 (48.88%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G  +  +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GY++TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +     K     F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFASRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYHDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLAISNASLLDEATAAAEAMTLLQRTGKPASNVFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURA4 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia ambifaria (strain MC40-6) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.621e-43
Identity = 87/178 (48.88%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G  +  +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GY++TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +     K     F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFASRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRALADKNQVFRSYIGQGYHDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLAISNASLLDEATAAAEAMTLLQRTGKPASNVFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_VIBCM (Glycine dehydrogenase [decarboxylating] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 85/175 (48.57%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            + +L   + F  RHN    ++QA M + V  ++LD+LI  TVP  IR+++    +     +E+ M+  M+  A +N++ ++FIG GYYNT  P VILRN+MENP WYT YTPYQ EI+QGRLESLLN+Q M+ DLT + ++NASLLDE TAAAEAMA+C    K K   F +A +
Sbjct:    5 LHSLSTQNEFVARHNGPDKQEQATMLKTVNAESLDALIAQTVPAQIRLEAPM--QLAPAQSEADMLATMKSFAKLNQLKRTFIGQGYYNTFTPNVILRNVMENPGWYTAYTPYQPEISQGRLESLLNYQQMVMDLTAMEIANASLLDEATAAAEAMALCQRAGKSKSNLFFVADD 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_VIBC3 (Glycine dehydrogenase [decarboxylating] OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 85/175 (48.57%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            + +L   + F  RHN    ++QA M + V  ++LD+LI  TVP  IR+++    +     +E+ M+  M+  A +N++ ++FIG GYYNT  P VILRN+MENP WYT YTPYQ EI+QGRLESLLN+Q M+ DLT + ++NASLLDE TAAAEAMA+C    K K   F +A +
Sbjct:    5 LHSLSTQNEFVARHNGPDKQEQATMLKTVNAESLDALIAQTVPAQIRLEAPM--QLAPAQSEADMLATMKSFAKLNQLKRTFIGQGYYNTFTPNVILRNVMENPGWYTAYTPYQPEISQGRLESLLNYQQMVMDLTAMEIANASLLDEATAAAEAMALCQRAGKSKSNLFFVADD 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHOSK (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 88/162 (54.32%), Postives = 113/162 (69.75%), Query Frame = 3
Query:  351 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG-LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            RRH   +P +  +M  +VG+ +LD LI+ TVP SIR ++      D   L E +++  M+++A+ N+V  S IG GYY T  PP I RNI+ENPAWYT YTPYQ EIAQGRLE+LLN+QTM+ADLTGLP++NASLLDE TAAAEAM M     K K + F +
Sbjct:   16 RRHIGPSPSEMEEMLRVVGVSSLDQLIEETVPASIRQET----PLDWAPLAEHELLARMREVAAKNRVMTSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEIAQGRLEALLNYQTMVADLTGLPVANASLLDEATAAAEAMTMAERASKSKARAFFV 173          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHOS4 (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 88/162 (54.32%), Postives = 113/162 (69.75%), Query Frame = 3
Query:  351 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG-LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            RRH   +P +  +M  +VG+ +LD LI+ TVP SIR ++      D   L E +++  M+++A+ N+V  S IG GYY T  PP I RNI+ENPAWYT YTPYQ EIAQGRLE+LLN+QTM+ADLTGLP++NASLLDE TAAAEAM M     K K + F +
Sbjct:   16 RRHIGPSPSEMEEMLRVVGVSSLDQLIEETVPASIRQET----PLDWAPLAEHELLARMREVAAKNRVMTSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEIAQGRLEALLNYQTMVADLTGLPVANASLLDEATAAAEAMTMAERASKSKARAFFV 173          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHIME (Glycine dehydrogenase [decarboxylating] OS=Rhizobium meliloti GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 90/171 (52.63%), Postives = 117/171 (68.42%), Query Frame = 3
Query:  330 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            KP D   RRH   +P +  +M ++VG  +LD+LID TVP SIR  +     +   +TE + ++ +++ A+ N+   S IG GYY T  PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ DLTGL ++NASLLDE TAAAEAMA+   + K K K F I  N
Sbjct:   13 KPYDFANRRHIGPSPAEMDEMLKVVGYPSLDALIDDTVPPSIRQRTPL--AWGAPMTEREALDKLRETANRNRKLVSLIGQGYYGTITPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNYQTMVCDLTGLDVANASLLDEATAAAEAMAIAERVAKSKAKAFFIDEN 181          
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP_PSYIN6.621e-4350.29Glycine dehydrogenase [decarboxylating] OS=Psychro... [more]
GCSP_PSESM6.621e-4349.42Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_PSEHT6.621e-4350.85Glycine dehydrogenase [decarboxylating] OS=Pseudoa... [more]
GCSP_BURCM6.621e-4348.88Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURA46.621e-4348.88Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_VIBCM8.647e-4348.57Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBC38.647e-4348.57Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_RHOSK8.647e-4354.32Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_RHOS48.647e-4354.32Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_RHIME8.647e-4352.63Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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