FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_PSEU2 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 84/172 (48.84%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            L  ++ F  RH      D+  M + +G D++++L ++ +P+SI+  S+       G +E+  +  ++ +AS N+++K++IG GYYNTH P  ILRN++ENPAWYT YTPYQ EI+QGRLESLLNFQT+I+DLTGLP++NASLLDE TAAAEAM  C  + K K      AS+
Sbjct:    7 LTTANEFIARHIGPRAADELAMLQTLGFDSIEALSESVIPESIKGTSVL--NLPAGQSEADALASIKAIASKNQLFKTYIGQGYYNTHTPAPILRNLLENPAWYTAYTPYQPEISQGRLESLLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKASQQFFASS 176          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_PSEFS (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas fluorescens (strain SBW25) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 84/171 (49.12%), Postives = 119/171 (69.59%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIAS 839
            L  ++ F  RH     ED+  M   +G D+L++L  + +P+SI+  S+     ++GL+E++ +  ++ +A  N+++K++IG GYYN H P  ILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQT+I+DLTGLP++NASLLDE TAAAEAM  C  + K K      AS
Sbjct:    5 LTTANEFIARHIGPRQEDEQHMLASLGFDSLEALSASVIPESIKGTSVL--GLEDGLSEAEALAKIKAIAGQNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSNAFFAS 173          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BURS3 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia sp. (strain 383) GN=gcvP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.647e-43
Identity = 87/178 (48.88%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  312 ISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIR-IDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +S+ AL+  D FA RH       Q  M + +G  +  +LIDA +P SIR  +++    F +  +E++ +  ++ LA  N+V++S+IG GY++TH P VILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQ M+ADLTGL +SNASLLDE TAAAEAM +     K     F +A +
Sbjct:   15 LSLAALETHDAFAERHIGPDAASQQAMLDTLGFASRAALIDAVIPASIRRAETLPLGPFAQPKSEAEALAALRVLADKNEVFRSYIGQGYHDTHTPAVILRNVLENPAWYTAYTPYQPEISQGRLEALLNFQQMVADLTGLAISNASLLDEATAAAEAMTLLQRTGKPTSNVFYVADD 192          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_SACD2 (Glycine dehydrogenase [decarboxylating] OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.129e-42
Identity = 90/176 (51.14%), Postives = 118/176 (67.05%), Query Frame = 3
Query:  303 TRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTF 827
            + G S++ L  S  F  RH     +    M + +GLD++D LID TVP SIR +  +       + E Q +  ++ +A  N+ +KS+IGMGY+ T+VPPVILRN++ENP WYT YTPYQ EIAQGRLE LLNFQ MI +LTG+ M+NAS+LDE TAAAEAMAM   + +K K  TF
Sbjct:    2 SHGTSLDELFNSRDFIGRHIGPNADQTRAMLDAMGLDSIDQLIDLTVPASIRGEETR--ALAAPVNEQQALAELKNIAGNNQRFKSYIGMGYHPTYVPPVILRNVLENPGWYTAYTPYQPEIAQGRLEGLLNFQQMIIELTGMDMANASMLDEATAAAEAMAMAKRVARKNKSNTF 175          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHOS1 (Glycine dehydrogenase [decarboxylating] OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.129e-42
Identity = 88/162 (54.32%), Postives = 112/162 (69.14%), Query Frame = 3
Query:  351 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG-LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            RRH   +P +  +M  +VG+ +LD LI+ TVP SIR ++      D   L E +++  M+++A  N+V  S IG GYY T  PP I RNI+ENPAWYT YTPYQ EIAQGRLE+LLN+QTM+ADLTGLP++NASLLDE TAAAEAM M     K K + F +
Sbjct:   16 RRHIGPSPSEMEEMLRVVGVSSLDQLIEETVPASIRQET----PLDWAPLAEHELLARMREVAGKNRVMTSLIGQGYYGTVTPPAIQRNILENPAWYTAYTPYQPEIAQGRLEALLNYQTMVADLTGLPVANASLLDEATAAAEAMTMAERASKSKARAFFV 173          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RALSO (Glycine dehydrogenase [decarboxylating] OS=Ralstonia solanacearum GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.129e-42
Identity = 85/173 (49.13%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRI-DSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            L+  D FA RH   +P++QA M   +G  +  +LIDA +P +IR  D M   +F + LTE   +  ++ +A  N+V +S IG GYY TH P VILRNI+ENPAWYT YTPYQ EI+QGRLE++LNFQ M+ DLT + ++NAS+LDE TAAAEAM +   + K     F +A +
Sbjct:   24 LEARDAFAERHIGPSPDEQAAMLATLGYASRAALIDAVIPPAIRRQDGMPLGEFTQPLTEEAALAKLRGIAGQNRVVRSLIGQGYYGTHTPGVILRNILENPAWYTAYTPYQPEISQGRLEAMLNFQQMVMDLTAMDIANASMLDEATAAAEAMTLLQRVGKHPSNVFFVADD 196          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_PSE14 (Glycine dehydrogenase [decarboxylating] OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.129e-42
Identity = 84/172 (48.84%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            L  ++ F  RH      D+  M + +G D++++L ++ +P+SI+  S+       G +E+  +  ++ +AS N+++K++IG GYYNTH P  ILRN++ENPAWYT YTPYQ EI+QGRLESLLNFQT+I+DLTGLP++NASLLDE TAAAEAM  C  + K K      AS+
Sbjct:    7 LTTANEFIARHIGPRAADEQAMLQTLGFDSIEALSESVIPESIKGTSVL--NLPAGQSEADALASIKAIASKNQLFKTYIGQGYYNTHTPAPILRNLLENPAWYTAYTPYQPEISQGRLESLLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSQQFFASS 176          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BORA1 (Glycine dehydrogenase [decarboxylating] OS=Bordetella avium (strain 197N) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.129e-42
Identity = 85/173 (49.13%), Postives = 116/173 (67.05%), Query Frame = 3
Query:  324 ALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            AL     F  RH   +  DQAKM   +G  +LD+L++  VP  IR  +          +E  ++  ++++A+ NKV++++IG GYY TH P V+LRN++ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ADLTGL +SNASLLDEGTAAAEAM +     K K   F ++ +
Sbjct:    4 ALDTHSDFIPRHIGPSEADQAKMLATIGCSSLDALLEEVVPPRIRNQAPL--ALPGARSEPDVLAELKQMAARNKVFRNYIGQGYYGTHTPNVVLRNVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRSAKSKSAVFFVSQH 174          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RHOP5 (Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas palustris (strain BisA53) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.475e-42
Identity = 89/163 (54.60%), Postives = 112/163 (68.71%), Query Frame = 3
Query:  345 FARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            FARRH   +P++ A M   VG  +LD+L+  T+P +IR    K       L+E + + HM +LA+ N+V+ S IG GYY T +P VI RNI+ENPAWYT YTPYQ EI+QGRLE+L NFQTMI DLTGL ++NASLLDEGTAAAEAMA+       K K F +
Sbjct:   15 FARRHIGPSPQEIAAMLRAVGAPSLDALMGETLPAAIR--QAKPLDLGPALSEPEALAHMAELAAKNQVFTSLIGQGYYGTAMPTVIQRNILENPAWYTAYTPYQPEISQGRLEALFNFQTMICDLTGLDVANASLLDEGTAAAEAMALAERAMPKKTKAFFV 175          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_RALPJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia pickettii (strain 12J) GN=gcvP PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.475e-42
Identity = 86/173 (49.71%), Postives = 114/173 (65.90%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRI-DSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            L+  D FA RH   + ++Q  M   +G  +  +LIDA +P +IR  D M   +F + LTE   +  ++ +A  N+V KS IG GYY TH P VILRNI+ENPAWYT YTPYQ EI+QGRLE++LNFQ M+ DLT + ++NAS+LDE TAAAEAM +   I K K   F +A +
Sbjct:   21 LEARDAFAHRHIGPSADEQTAMLGTLGYTSRAALIDAVIPPAIRRQDGMPLGEFTQPLTEEAALAKLRGIAGQNRVVKSLIGQGYYGTHTPGVILRNILENPAWYTAYTPYQPEISQGRLEAMLNFQQMVIDLTAMDIANASMLDEATAAAEAMTLLQRIGKSKSTVFFVADD 193          
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP_PSEU28.647e-4348.84Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_PSEFS8.647e-4349.12Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_BURS38.647e-4348.88Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_SACD21.129e-4251.14Glycine dehydrogenase [decarboxylating] OS=Sacchar... [more]
GCSP_RHOS11.129e-4254.32Glycine dehydrogenase [decarboxylating] OS=Rhodoba... [more]
GCSP_RALSO1.129e-4249.13Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_PSE141.129e-4248.84Glycine dehydrogenase [decarboxylating] OS=Pseudom... [more]
GCSP_BORA11.129e-4249.13Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_RHOP51.475e-4254.60Glycine dehydrogenase [decarboxylating] OS=Rhodops... [more]
GCSP_RALPJ1.475e-4249.71Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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