FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEPK (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas putida (strain KT2440) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.475e-42
Identity = 86/171 (50.29%), Postives = 116/171 (67.84%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIAS 839
            L  ++ F  RH      D+  M   +G D+LD++  A +P SI+  S+  S   +G +E+  +  ++ +A  N+++KS+IG GYYNTH P  ILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQT+I+DLTGLP++NASLLDE TAAAEAM  C  + K K      AS
Sbjct:    5 LGTANEFIARHIGPRAADEQAMLTALGFDSLDAMTAAVIPDSIKGTSVLGSH--DGQSEADALAALKAIAGKNQLFKSYIGQGYYNTHTPAPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKSSHAFFAS 173          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_HUMAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Homo sapiens GN=GLDC PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.926e-42
Identity = 85/168 (50.60%), Postives = 122/168 (72.62%), Query Frame = 3
Query:  318 VEALKPS-DTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK 818
            +E L P  D FARRH     +DQ +M + +GL ++D LI+ TVP +IR+   +  K ++ + E++++  +  ++S N++++S+IGMGYYN  VP  ILRN++EN  W TQYTPYQ E++QGRLESLLN+QTM+ D+TGL M+NASLLDEGTAAAEA+ +C    K +K
Sbjct:   53 LERLLPRHDDFARRHIGPGDKDQREMLQTLGLASIDELIEKTVPANIRLK--RPLKMEDPVCENEILATLHAISSKNQIWRSYIGMGYYNCSVPQTILRNLLENSGWITQYTPYQPEVSQGRLESLLNYQTMVCDITGLDMANASLLDEGTAAAEALQLCYRHNKRRK 218          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_GRAFK (Glycine dehydrogenase [decarboxylating] OS=Gramella forsetii (strain KT0803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.926e-42
Identity = 82/162 (50.62%), Postives = 121/162 (74.69%), Query Frame = 3
Query:  336 SDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK 821
            +D+FA RH     E+  +M + +G+++++ LI  T+P  IR+D        + ++E+Q  EH++KL+  N+V+K++IG+GY+   +P VI RNI+ENP WYT YTPYQAEIAQGRLE+LLNFQTM++DLTG+ ++NASLLDE TAAAEAMA+ + ++  K+K
Sbjct:    3 TDSFALRHIGPKAENLQEMLDTIGVESIEQLIYETIPDDIRLDQPL--NLPKAMSENQYAEHIKKLSEKNRVFKTYIGLGYHQAILPAVIQRNILENPGWYTAYTPYQAEIAQGRLEALLNFQTMVSDLTGMEIANASLLDESTAAAEAMALLHAVRDRKQK 162          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_GLUOX (Glycine dehydrogenase [decarboxylating] OS=Gluconobacter oxydans GN=gcvP PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.926e-42
Identity = 91/180 (50.56%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  312 ISVEALKPSDT--FARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEG----LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            + V  L P+ T  F+ RH    P +  +M  +VG  +LD LID T+P +I        + D G    LTE   +  ++++AS N+V  S IG GYY+T +PPVI RNI+ENPAWYT YTPYQ EI+QGRLE+LLNFQT++ADLTGL ++NASLLDEGTA AEAMA+   + K K   F +
Sbjct:    5 LPVTTLWPAQTEDFSSRHIGPRPSEIGEMLRVVGASSLDDLIDKTIPAAI------LDRGDHGIGAALTEQDALARLRQIASRNQVLTSMIGQGYYDTVLPPVIQRNILENPAWYTAYTPYQPEISQGRLEALLNFQTLVADLTGLDIANASLLDEGTACAEAMALAQRVGKSKATAFFV 178          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BORPA (Glycine dehydrogenase [decarboxylating] OS=Bordetella parapertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.926e-42
Identity = 83/166 (50.00%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  345 FARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            F  RH   + EDQA M   +G  +LD+LID  VP  IR  S          +E+ +++ ++++A+ N++Y+++IG GYY TH P V+LRN++ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ADLTGL +SNASLLDEGTAAAEAM +     +     F ++ +
Sbjct:   11 FIPRHIGPSDEDQATMLAAIGAASLDALIDEVVPPRIR--SRAPLALPAARSETDVLQDLKRMAARNQIYRNYIGQGYYGTHTPNVVLRNVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRGSRSSSPVFFVSQH 174          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BORBR (Glycine dehydrogenase [decarboxylating] OS=Bordetella bronchiseptica GN=gcvP PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.926e-42
Identity = 83/166 (50.00%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  345 FARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            F  RH   + EDQA M   +G  +LD+LID  VP  IR  S          +E+ +++ ++++A+ N++Y+++IG GYY TH P V+LRN++ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ADLTGL +SNASLLDEGTAAAEAM +     +     F ++ +
Sbjct:   11 FIPRHIGPSDEDQATMLAAIGAASLDALIDEVVPPRIR--SRAPLALPAARSETDVLQDLKRMAARNQIYRNYIGQGYYGTHTPNVVLRNVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRGSRSSSPVFFVSQH 174          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_BORPE (Glycine dehydrogenase [decarboxylating] OS=Bordetella pertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.516e-42
Identity = 83/166 (50.00%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  345 FARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            F  RH   + EDQA M   +G  +LD+LID  VP  IR  S          +E+ +++ ++++A+ N++Y+++IG GYY TH P V+LRN++ENPAWYT YTPYQ EI+QGRLE+LLN+QTM+ADLTGL +SNASLLDEGTAAAEAM +     +     F ++ +
Sbjct:   11 FIPRHIGPSDEDQATMLVAIGAASLDALIDEVVPPRIR--SRAPLALPAARSETDVLQDLKRIAARNQIYRNYIGQGYYGTHTPNVVLRNVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRGSRSSSPVFFVSQH 174          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP1_PSEF5 (Glycine dehydrogenase [decarboxylating] 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.516e-42
Identity = 84/171 (49.12%), Postives = 119/171 (69.59%), Query Frame = 3
Query:  327 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIAS 839
            L  ++ F  RH      D+  M   +G D+L++L  + +P+SI+  S+   +   GL+E+Q +  ++ +A+ N+++K++IG GYYN H P  ILRN++ENPAWYT YTPYQ EI+QGRLE+LLNFQT+I+DL+GLP++NASLLDEGTAAAEAM  C  + K K      AS
Sbjct:    5 LSTANEFIARHIGPRQGDEQAMLNSLGFDSLEALSASVIPESIKGTSVL--ELGHGLSEAQALASIKAIAARNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQGRLEALLNFQTLISDLSGLPIANASLLDEGTAAAEAMTFCKRLSKNKGSHAFFAS 173          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_XANAC (Glycine dehydrogenase [decarboxylating] OS=Xanthomonas axonopodis pv. citri GN=gcvP PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.286e-42
Identity = 87/173 (50.29%), Postives = 117/173 (67.63%), Query Frame = 3
Query:  315 SVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            S+  L+    F  RH      + A+M ++VG  +LD+L DA VP +I+  S       E +TE + +  ++ +AS N+V ++FIG GYY TH P VILRNI+ENPAWYT YTPYQAEI+QGR+E+L+NFQT+ ADLTG+ ++NASLLDE TAAAEAM +     K K  TF +
Sbjct:    7 SLRDLEHHSAFVERHIGPNDAEIAQMLDVVGHASLDALTDAIVPGNIK--SPAPLALPEAITEEEALAKIRAIASKNQVQRNFIGQGYYGTHTPKVILRNILENPAWYTAYTPYQAEISQGRMEALINFQTLCADLTGMQIANASLLDEATAAAEAMTLAKRSAKSKSNTFFV 177          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.291e-42
Identity = 88/168 (52.38%), Postives = 122/168 (72.62%), Query Frame = 3
Query:  333 PSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK--KKTFI 830
            P DTF RRH     +  A+M + +GL +++ LID  VP  IR+   K     +  TE +++++++ +AS N+V++S+IG GY++  +P VI RNI+ENP WYT YTPYQAEI+QGRLE+LLNFQTMI DLTGL +SNASLLDEGTAAAEAM +  +++K +  KK F+
Sbjct:   20 PLDTFPRRHIGPNLQQTAEMLKELGLSSVEELIDKAVPVGIRLK--KSLDLPKASTEHKILQNLKGIASQNQVFRSYIGAGYHSCIIPGVIQRNILENPGWYTAYTPYQAEISQGRLEALLNFQTMIIDLTGLEISNASLLDEGTAAAEAMFLAYSVRKNETAKKFFV 185          
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSP1_PSEPK1.475e-4250.29Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_HUMAN1.926e-4250.60Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_GRAFK1.926e-4250.62Glycine dehydrogenase [decarboxylating] OS=Gramell... [more]
GCSP_GLUOX1.926e-4250.56Glycine dehydrogenase [decarboxylating] OS=Glucono... [more]
GCSP_BORPA1.926e-4250.00Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_BORBR1.926e-4250.00Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_BORPE2.516e-4250.00Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP1_PSEF52.516e-4249.12Glycine dehydrogenase [decarboxylating] 1 OS=Pseud... [more]
GCSP_XANAC3.286e-4250.29Glycine dehydrogenase [decarboxylating] OS=Xanthom... [more]
GCSP_LEPIN4.291e-4252.38Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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