FC925573

Overview
NameFC925573
Unique NameFC925573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SYNP6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 64/105 (60.95%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D ++  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT++ILFICGGAFV +EK +  R
Sbjct:  183 DVENILLRLLQVADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLEKLVDRR 287
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SYNE7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus elongatus (strain PCC 7942) GN=clpX PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 64/105 (60.95%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D ++  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT++ILFICGGAFV +EK +  R
Sbjct:  183 DVENILLRLLQVADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLEKLVDRR 287
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_NOVAD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER*YQFRGYNFNVVALD 570
            D  + I+ + Q SDYNV  AQ GIVYIDE+DKI++KAE+ +I+RDVSGEGVQQALLK++EGT  +VP +G RKHP+ + +Q+DT +ILFICGGAF  +EK I++R  Q R   F     D
Sbjct:  157 DVENIILKLLQASDYNVEKAQHGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIADR-LQKRSIGFGAHVAD 275
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_NOSP7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 63/105 (60.00%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D ++  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT +ILF+CGGAFV +EK + +R
Sbjct:  180 DVENILLRLLQVADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFVCGGAFVGLEKVVDQR 284
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_ERYLH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Erythrobacter litoralis (strain HTCC2594) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER*YQFRGYNFNVVALD 570
            D  + I+ + Q SDYNV  AQ GIVYIDE+DKIT+KAE+ +I+RDVSGEGVQQALLK++EGT  +VP +G RKHP+ + +Q+DT +ILFICGGAF  ++K I++R  Q R   F     D
Sbjct:  157 DVENIILKLLQASDYNVDKAQHGIVYIDEIDKITRKAENPSITRDVSGEGVQQALLKLMEGTTASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIADR-LQKRSIGFGAHVAD 275
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_CYAP8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cyanothece sp. (strain PCC 8801) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 65/105 (61.90%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT +ILFICGGAFV ++K I +R
Sbjct:  181 DVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLDKVIEQR 285
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SILPO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Silicibacter pomeroyi GN=clpX PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 64/105 (60.95%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q S+YNV  AQ+GIVYIDEVDKIT+K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  ++K I++R
Sbjct:  159 DVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIAQR 263
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_CYAP7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cyanothece sp. (strain PCC 7424) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.952e-31
Identity = 65/105 (61.90%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP  D IQIDT +ILFICGGAFV ++K + +R
Sbjct:  181 DVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLDKIVEQR 285
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SILST (ATP-dependent Clp protease ATP-binding subunit clpX OS=Silicibacter sp. (strain TM1040) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 64/105 (60.95%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q S+YNV  AQ+GIVYIDEVDKIT+K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  ++K I +R
Sbjct:  157 DVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSENPSITRDVSGEGVQQALLKLMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDKIIKQR 261
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_RHOSK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 64/105 (60.95%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q S+YNV  AQ+GIVYIDEVDKIT+K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +EK I++R
Sbjct:  155 DVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIAQR 259
The following BLAST results are available for this feature:
BLAST of FC925573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_SYNP61.495e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYNE71.495e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NOVAD1.495e-3156.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_NOSP71.495e-3160.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ERYLH1.495e-3156.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CYAP81.495e-3161.90ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SILPO1.952e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CYAP71.952e-3161.90ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SILST2.550e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOSK2.550e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YK13FM1 TF Citrus clementina cDNA clone KN0AAP3YK13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925573 ID=FC925573; Name=FC925573; organism=Citrus clementina; type=EST; length=609bp
CTTATATGTTCATTTTTTGTCCATTTCTCGTAGGTGTGTAGTAGGAAGGT
GAACCTGGTACTAGGTAGGTTTTGTGTGGTGTTTTTGGGGTAGAATATGG
AAGGTGCTTTTAGTTAAGGCTGCATACTTCTTATGTCCTTGTAAGATGGG
CAGAAAGTGTTATGTCACTTGGGAAATTGTTGGAATTTATGACATTTTAT
GCTTATATTGGATTGCAGATCTAAAATCATTCTCGTTTCACAGGTTTCTG
ACTATAATGTTGCAGCTGCTCAGCAGGGCATTGTGTATATTGATGAAGTT
GATAAGATCACCAAAAAGGCGGAGAGCCTTAATATTAGTCGAGATGTGTC
TGGAGAGGGTGTTCAACAAGCTCTGCTGAAAATGCTGGAAGGAACTGTTG
TCAATGTTCCTGAGAAGGGAGCTCGAAAGCATCCTAGAGGTGACAACATT
CAGATTGACACAAAGGATATACTCTTTATCTGTGGGGGTGCCTTTGTTGA
CATAGAAAAAACAATCTCGGAAAGGTAATACCAGTTTAGAGGTTATAATT
TCAATGTCGTTGCATTGGACATGATGTGGATAGTTTTTCCTTGGAAATTG
AGTGTGCTT
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