FC925573

Overview
NameFC925573
Unique NameFC925573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_LACRD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Lactobacillus reuteri (strain DSM 20016) GN=clpX PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 62/105 (59.05%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q +D++V  A++GI+YIDE+DKI KK+E+++I+RDVSGEGVQQALLK+LEGT+ NVP +G RKHP+ + IQ+DTK+ILFI GGAF  IE  + ER
Sbjct:  156 DVENIILKLLQAADFDVERAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTKNILFIVGGAFDGIETIVKER 260
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_GLUDA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=clpX PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 61/105 (58.10%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q +DYNV  AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT ++LFICGGAF  ++K IS R
Sbjct:  155 DVENIILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNMLFICGGAFAGLDKIISAR 259
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_BARQU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bartonella quintana GN=clpX PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.682e-30
Identity = 62/105 (59.05%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q +DYNV  AQ+GIVYIDEVDKI++KA++ +I+RDVSGEGVQQALLK++EGT+ +VP +G RKHP+ + +Q++T +ILFICGGAF  +E+ IS R
Sbjct:  158 DVENIILKLLQAADYNVERAQRGIVYIDEVDKISRKADNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQVNTTNILFICGGAFAGLERIISGR 262
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SYNPX (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain WH8102) GN=clpX PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 63/105 (60.00%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q +D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP  D IQIDT  ILFICGGAFV +++ + +R
Sbjct:  180 DVENILLRLLQKADMDVDQAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTSQILFICGGAFVGLDEVVQKR 284
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_STRZP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus pneumoniae (strain P1031) GN=clpX PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 59/105 (56.19%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D+N+  A++GI+Y+DE+DKI KK+E+++I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + IQ+DTK+ILFI GGAF  IE+ + +R
Sbjct:  157 DVENILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQR 261
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_STRZJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus pneumoniae (strain JJA) GN=clpX PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 59/105 (56.19%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D+N+  A++GI+Y+DE+DKI KK+E+++I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + IQ+DTK+ILFI GGAF  IE+ + +R
Sbjct:  157 DVENILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQR 261
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_STRU0 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=clpX PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q +DYNV  A++GI+Y+DE+DKI KK E+++I+RDVSGEGVQQALLK++EGTV +VP +G RKHP  + IQIDTK+ILFI GGAF  IE+ + +R
Sbjct:  156 DVENILLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQR 260
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_STRS7 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=clpX PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q +DYNV  A++GI+Y+DE+DKI KK E+++I+RDVSGEGVQQALLK++EGTV +VP +G RKHP  + IQIDTK+ILFI GGAF  IE+ + +R
Sbjct:  156 DVENILLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQR 260
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_STRR6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=clpX PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 59/105 (56.19%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D+N+  A++GI+Y+DE+DKI KK+E+++I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + IQ+DTK+ILFI GGAF  IE+ + +R
Sbjct:  157 DVENILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTKNILFIVGGAFDGIEEIVKQR 261
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_STRPZ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=clpX PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.809e-30
Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q +DYNV  A++GI+Y+DE+DKI KK E+++I+RDVSGEGVQQALLK++EGTV +VP +G RKHP  + IQIDTK+ILFI GGAF  IE+ + +R
Sbjct:  156 DVENILLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNILFIVGGAFDGIEEIVKQR 260
The following BLAST results are available for this feature:
BLAST of FC925573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_LACRD3.682e-3059.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_GLUDA3.682e-3058.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BARQU3.682e-3059.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYNPX4.809e-3060.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRZP4.809e-3056.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRZJ4.809e-3056.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRU04.809e-3058.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRS74.809e-3058.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRR64.809e-3056.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_STRPZ4.809e-3058.10ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YK13FM1 TF Citrus clementina cDNA clone KN0AAP3YK13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925573 ID=FC925573; Name=FC925573; organism=Citrus clementina; type=EST; length=609bp
CTTATATGTTCATTTTTTGTCCATTTCTCGTAGGTGTGTAGTAGGAAGGT
GAACCTGGTACTAGGTAGGTTTTGTGTGGTGTTTTTGGGGTAGAATATGG
AAGGTGCTTTTAGTTAAGGCTGCATACTTCTTATGTCCTTGTAAGATGGG
CAGAAAGTGTTATGTCACTTGGGAAATTGTTGGAATTTATGACATTTTAT
GCTTATATTGGATTGCAGATCTAAAATCATTCTCGTTTCACAGGTTTCTG
ACTATAATGTTGCAGCTGCTCAGCAGGGCATTGTGTATATTGATGAAGTT
GATAAGATCACCAAAAAGGCGGAGAGCCTTAATATTAGTCGAGATGTGTC
TGGAGAGGGTGTTCAACAAGCTCTGCTGAAAATGCTGGAAGGAACTGTTG
TCAATGTTCCTGAGAAGGGAGCTCGAAAGCATCCTAGAGGTGACAACATT
CAGATTGACACAAAGGATATACTCTTTATCTGTGGGGGTGCCTTTGTTGA
CATAGAAAAAACAATCTCGGAAAGGTAATACCAGTTTAGAGGTTATAATT
TCAATGTCGTTGCATTGGACATGATGTGGATAGTTTTTCCTTGGAAATTG
AGTGTGCTT
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