FC925573

Overview
NameFC925573
Unique NameFC925573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_RHOS5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 64/105 (60.95%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q S+YNV  AQ+GIVYIDEVDKIT+K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +EK I++R
Sbjct:  155 DVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIAQR 259
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_RHOS1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 64/105 (60.95%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q S+YNV  AQ+GIVYIDEVDKIT+K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +EK I++R
Sbjct:  155 DVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIAQR 259
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_DINSH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Dinoroseobacter shibae (strain DFL 12) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 64/105 (60.95%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q S+YNV  AQ+GIVYIDEVDKIT+K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +EK I++R
Sbjct:  154 DVENIILKLLQASEYNVERAQRGIVYIDEVDKITRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIIAQR 258
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_ACAM1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acaryochloris marina (strain MBIC 11017) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.550e-31
Identity = 65/105 (61.90%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DK+ +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP  D IQIDT +ILFICGGAFV ++K I +R
Sbjct:  179 DVENILLRLLQVADLDVEEAQRGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTTNILFICGGAFVGLDKIIEQR 283
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_PROMT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Prochlorococcus marinus (strain NATL2A) GN=clpX PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 64/105 (60.95%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q +D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP GD+IQIDT  ILFICGGAFV ++  + +R
Sbjct:  179 DVENILLRLLQKADMDVDLAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYGDSIQIDTSQILFICGGAFVGLDDVVEKR 283
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_PROM1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Prochlorococcus marinus (strain NATL1A) GN=clpX PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 64/105 (60.95%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q +D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP GD+IQIDT  ILFICGGAFV ++  + +R
Sbjct:  179 DVENILLRLLQKADMDVDLAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYGDSIQIDTSQILFICGGAFVGLDDVVEKR 283
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_METSB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=clpX PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 64/105 (60.95%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q SDYNV  AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +EK IS R
Sbjct:  156 DVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLEKIISTR 260
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_METRJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=clpX PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q SDYNV  AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +E+ IS+R
Sbjct:  156 DVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQR 260
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_METPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=clpX PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q SDYNV  AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +E+ IS+R
Sbjct:  156 DVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQR 260
[Close]
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_METEP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium extorquens (strain PA1) GN=clpX PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q SDYNV  AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +E+ IS+R
Sbjct:  156 DVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLERIISQR 260
The following BLAST results are available for this feature:
BLAST of FC925573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_RHOS52.550e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOS12.550e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DINSH2.550e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACAM12.550e-3161.90ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PROMT3.330e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PROM13.330e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METSB3.330e-3160.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METRJ3.330e-3160.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METPB3.330e-3160.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METEP3.330e-3160.00ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YK13FM1 TF Citrus clementina cDNA clone KN0AAP3YK13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925573 ID=FC925573; Name=FC925573; organism=Citrus clementina; type=EST; length=609bp
CTTATATGTTCATTTTTTGTCCATTTCTCGTAGGTGTGTAGTAGGAAGGT
GAACCTGGTACTAGGTAGGTTTTGTGTGGTGTTTTTGGGGTAGAATATGG
AAGGTGCTTTTAGTTAAGGCTGCATACTTCTTATGTCCTTGTAAGATGGG
CAGAAAGTGTTATGTCACTTGGGAAATTGTTGGAATTTATGACATTTTAT
GCTTATATTGGATTGCAGATCTAAAATCATTCTCGTTTCACAGGTTTCTG
ACTATAATGTTGCAGCTGCTCAGCAGGGCATTGTGTATATTGATGAAGTT
GATAAGATCACCAAAAAGGCGGAGAGCCTTAATATTAGTCGAGATGTGTC
TGGAGAGGGTGTTCAACAAGCTCTGCTGAAAATGCTGGAAGGAACTGTTG
TCAATGTTCCTGAGAAGGGAGCTCGAAAGCATCCTAGAGGTGACAACATT
CAGATTGACACAAAGGATATACTCTTTATCTGTGGGGGTGCCTTTGTTGA
CATAGAAAAAACAATCTCGGAAAGGTAATACCAGTTTAGAGGTTATAATT
TCAATGTCGTTGCATTGGACATGATGTGGATAGTTTTTCCTTGGAAATTG
AGTGTGCTT
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