FC925573

Overview
NameFC925573
Unique NameFC925573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain SDF) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 61/95 (64.21%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  241 QVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            Q +DY+V  AQ+GI+YIDE+DKIT+K+E+ +I+RDVSGEGVQQALLKM+EGTV ++P +G RKHP+ + IQIDT +ILFICGGAF  +EK + +R
Sbjct:  166 QKADYDVEKAQKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQR 260          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_ACIBC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain ACICU) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 61/95 (64.21%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  241 QVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            Q +DY+V  AQ+GI+YIDE+DKIT+K+E+ +I+RDVSGEGVQQALLKM+EGTV ++P +G RKHP+ + IQIDT +ILFICGGAF  +EK + +R
Sbjct:  166 QKADYDVEKAQKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQR 260          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_ACIB5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AB0057) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 61/95 (64.21%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  241 QVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            Q +DY+V  AQ+GI+YIDE+DKIT+K+E+ +I+RDVSGEGVQQALLKM+EGTV ++P +G RKHP+ + IQIDT +ILFICGGAF  +EK + +R
Sbjct:  166 QKADYDVEKAQKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQR 260          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_ACIB3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter baumannii (strain AB307-0294) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.266e-30
Identity = 61/95 (64.21%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  241 QVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            Q +DY+V  AQ+GI+YIDE+DKIT+K+E+ +I+RDVSGEGVQQALLKM+EGTV ++P +G RKHP+ + IQIDT +ILFICGGAF  +EK + +R
Sbjct:  166 QKADYDVEKAQKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKMIEGTVASIPPQGGRKHPQQEFIQIDTSNILFICGGAFAGLEKIVQQR 260          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_XYLFT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.653e-30
Identity = 62/103 (60.19%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  250 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER*YQFRGYNFNV 558
            DY+V  AQ GIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DTK+ILFICGGAF  ++K I +R  +  G  F V
Sbjct:  172 DYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRCNEVGGIGFGV 274          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_XYLF2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Xylella fastidiosa (strain M23) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.653e-30
Identity = 62/103 (60.19%), Postives = 83/103 (80.58%), Query Frame = 1
Query:  250 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER*YQFRGYNFNV 558
            DY+V  AQ GIVYIDE+DKI++K+E+ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DTK+ILFICGGAF  ++K I +R  +  G  F V
Sbjct:  172 DYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVDTKNILFICGGAFAGLDKVIQQRCNEVGGIGFGV 274          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_THEEB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thermosynechococcus elongatus (strain BP-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.653e-30
Identity = 64/105 (60.95%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q ++ +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLK+LEGT+ NVP +G RKHP  D IQIDT +ILFICGGAFV +EKTI +R
Sbjct:  175 DVENILLRLLQNANMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPYQDCIQIDTTNILFICGGAFVGLEKTIEQR 279          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_RHORT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.653e-30
Identity = 62/105 (59.05%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + I+ + Q SDYNV  AQ+GIVYIDE+DKI++K+++ +I+RDVSGEGVQQALLK++EGTV +VP +G RKHP+ + +Q+DT +ILFICGGAF  +++ IS R
Sbjct:  156 DVENIILKLLQASDYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTTNILFICGGAFAGLDRIISAR 260          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_PROMP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpX PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.653e-30
Identity = 63/105 (60.00%), Postives = 82/105 (78.10%), Query Frame = 1
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q S+ NV  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT  ILFICGGAF+ +E  + +R
Sbjct:  183 DVENILLRLLQKSEMNVDLAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPNHDCIQIDTSQILFICGGAFIGLEDIVQKR 287          
BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_BDEBA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bdellovibrio bacteriovorus GN=clpX PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.653e-30
Identity = 61/105 (58.10%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + Q SDY+V  AQ+G++Y+DE+DKI++K+E+ +I+RDVSGEGVQQALLK+LEGTV N+P KG RKHP+ + IQ+DT +ILFI GGAFV ++K I +R
Sbjct:  157 DVENVVLNLLQASDYDVEKAQKGVIYVDEIDKISRKSENPSITRDVSGEGVQQALLKILEGTVANLPPKGGRKHPQQEFIQVDTTNILFIVGGAFVGLDKIIEQR 261          
The following BLAST results are available for this feature:
BLAST of FC925573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_ACIBS1.266e-3064.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIBC1.266e-3064.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIB51.266e-3064.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIB31.266e-3064.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XYLFT1.653e-3060.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_XYLF21.653e-3060.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THEEB1.653e-3060.95ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHORT1.653e-3059.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PROMP1.653e-3060.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BDEBA1.653e-3058.10ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YK13FM1 TF Citrus clementina cDNA clone KN0AAP3YK13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925573 ID=FC925573; Name=FC925573; organism=Citrus clementina; type=EST; length=609bp
CTTATATGTTCATTTTTTGTCCATTTCTCGTAGGTGTGTAGTAGGAAGGT
GAACCTGGTACTAGGTAGGTTTTGTGTGGTGTTTTTGGGGTAGAATATGG
AAGGTGCTTTTAGTTAAGGCTGCATACTTCTTATGTCCTTGTAAGATGGG
CAGAAAGTGTTATGTCACTTGGGAAATTGTTGGAATTTATGACATTTTAT
GCTTATATTGGATTGCAGATCTAAAATCATTCTCGTTTCACAGGTTTCTG
ACTATAATGTTGCAGCTGCTCAGCAGGGCATTGTGTATATTGATGAAGTT
GATAAGATCACCAAAAAGGCGGAGAGCCTTAATATTAGTCGAGATGTGTC
TGGAGAGGGTGTTCAACAAGCTCTGCTGAAAATGCTGGAAGGAACTGTTG
TCAATGTTCCTGAGAAGGGAGCTCGAAAGCATCCTAGAGGTGACAACATT
CAGATTGACACAAAGGATATACTCTTTATCTGTGGGGGTGCCTTTGTTGA
CATAGAAAAAACAATCTCGGAAAGGTAATACCAGTTTAGAGGTTATAATT
TCAATGTCGTTGCATTGGACATGATGTGGATAGTTTTTCCTTGGAAATTG
AGTGTGCTT
back to top