FC925596 | Citrus Genome Database

Overview


Name	FC925596
Unique Name	FC925596
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	600

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SHIBS (Adenine phosphoribosyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=apt PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_SHIB3 (Adenine phosphoribosyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=apt PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_ESCF3 (Adenine phosphoribosyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=apt PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVTDAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_ECOUT (Adenine phosphoribosyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=apt PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_ECOSM (Adenine phosphoribosyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=apt PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_ECOSE (Adenine phosphoribosyltransferase OS=Escherichia coli (strain SE11) GN=apt PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_ECOLU (Adenine phosphoribosyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=apt PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_ECOLI (Adenine phosphoribosyltransferase OS=Escherichia coli (strain K12) GN=apt PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_ECOLC (Adenine phosphoribosyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=apt PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_ECOL6 (Adenine phosphoribosyltransferase OS=Escherichia coli O6 GN=apt PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.579e-39
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + ++I+ I D+PKPGI+F+D+T+LL D KA+  +IDL VERYK+  I+ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:   11 LKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETIS 97

HSP 2 Score: 74.3294 bits (181), Expect = 8.579e-39
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D +E+HV A++ G++ L+VDDL+ATGGT+ A ++L+ R+G  V + A +I L +L G + L
Sbjct:   98 ETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRL 167

The following BLAST results are available for this feature:

BLAST of FC925596 vs. ExPASy Swiss-Prot

BLAST of FC925596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
APT_SHIBS	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Shigella boyd...	[more]
APT_SHIB3	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Shigella boyd...	[more]
APT_ESCF3	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Escherichia f...	[more]
APT_ECOUT	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Escherichia c...	[more]
APT_ECOSM	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Escherichia c...	[more]
APT_ECOSE	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Escherichia c...	[more]
APT_ECOLU	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Escherichia c...	[more]
APT_ECOLI	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Escherichia c...	[more]
APT_ECOLC	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Escherichia c...	[more]
APT_ECOL6	8.579e-39	57.47	Adenine phosphoribosyltransferase OS=Escherichia c...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP11YH06FM1 TF Citrus clementina cDNA clone KN0AAP11YH06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC925596 ID=FC925596; Name=FC925596; organism=Citrus clementina; type=EST; length=600bp
CACTGACTATAACTTGCGTTTTGAGTAGTGAGTGGTGACTCGACGCAACC
TCAACAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTG
GGATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATT
ATGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGA
TACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTG
TTGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTG
GCTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGG
GGAGGTTATTTCCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAATG
GAGATGCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGA
CGATCTAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTTG
AGCGAGTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCCA
GAGCTAAAGGGTCGGGAACCGCTGGGAGAGAAACCACTATTTGTTCCTGT