FC925596 | Citrus Genome Database

Overview


Name	FC925596
Unique Name	FC925596
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	600

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_STRPB (Adenine phosphoribosyltransferase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=apt PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.684e-30
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            +++ I  I D+PK GI F+DI+ L+ D KA+   I    +   DK+I +V G EARGFI G P+A+ +G  F P+RKP KLP +V+S
Sbjct:    3 LTNYIASIKDYPKAGITFRDISPLMADGKAYSYAIREIAQYACDKDIDMVVGPEARGFIIGCPVAVELGIGFAPVRKPGKLPRDVVS 89

HSP 2 Score: 73.1738 bits (178), Expect = 2.684e-30
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2

Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            +Y  EYG D + MH  A++ G+R LIVDDL+ATGGT+ A I ++E++G  V  CA +IEL  L GR  +
Sbjct:   91 DYEKEYGLDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELEGLNGRHAI 159

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_STRP8 (Adenine phosphoribosyltransferase OS=Streptococcus pyogenes serotype M18 GN=apt PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.684e-30
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            +++ I  I D+PK GI F+DI+ L+ D KA+   I    +   DK+I +V G EARGFI G P+A+ +G  F P+RKP KLP +V+S
Sbjct:    3 LTNYIASIKDYPKAGITFRDISPLMADGKAYSYAIREIAQYACDKDIDMVVGPEARGFIIGCPVAVELGIGFAPVRKPGKLPRDVVS 89

HSP 2 Score: 73.1738 bits (178), Expect = 2.684e-30
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2

Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            +Y  EYG D + MH  A++ G+R LIVDDL+ATGGT+ A I ++E++G  V  CA +IEL  L GR  +
Sbjct:   91 DYEKEYGLDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELEGLNGRHAI 159

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_STRP6 (Adenine phosphoribosyltransferase OS=Streptococcus pyogenes serotype M6 GN=apt PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.684e-30
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            +++ I  I D+PK GI F+DI+ L+ D KA+   I    +   DK+I +V G EARGFI G P+A+ +G  F P+RKP KLP +V+S
Sbjct:    3 LTNYIASIKDYPKAGITFRDISPLMADGKAYSYAIREIAQYACDKDIDMVVGPEARGFIIGCPVAVELGIGFAPVRKPGKLPRDVVS 89

HSP 2 Score: 73.1738 bits (178), Expect = 2.684e-30
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2

Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            +Y  EYG D + MH  A++ G+R LIVDDL+ATGGT+ A I ++E++G  V  CA +IEL  L GR  +
Sbjct:   91 DYEKEYGLDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELEGLNGRHAI 159

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_STRP3 (Adenine phosphoribosyltransferase OS=Streptococcus pyogenes serotype M3 GN=apt PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.684e-30
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            +++ I  I D+PK GI F+DI+ L+ D KA+   I    +   DK+I +V G EARGFI G P+A+ +G  F P+RKP KLP +V+S
Sbjct:    3 LTNYIASIKDYPKAGITFRDISPLMADGKAYSYAIREIAQYACDKDIDMVVGPEARGFIIGCPVAVELGIGFAPVRKPGKLPRDVVS 89

HSP 2 Score: 73.1738 bits (178), Expect = 2.684e-30
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2

Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            +Y  EYG D + MH  A++ G+R LIVDDL+ATGGT+ A I ++E++G  V  CA +IEL  L GR  +
Sbjct:   91 DYEKEYGLDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELEGLNGRHAI 159

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_STRP1 (Adenine phosphoribosyltransferase OS=Streptococcus pyogenes serotype M1 GN=apt PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.684e-30
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            +++ I  I D+PK GI F+DI+ L+ D KA+   I    +   DK+I +V G EARGFI G P+A+ +G  F P+RKP KLP +V+S
Sbjct:    3 LTNYIASIKDYPKAGITFRDISPLMADGKAYSYAIREIAQYACDKDIDMVVGPEARGFIIGCPVAVELGIGFAPVRKPGKLPRDVVS 89

HSP 2 Score: 73.1738 bits (178), Expect = 2.684e-30
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2

Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            +Y  EYG D + MH  A++ G+R LIVDDL+ATGGT+ A I ++E++G  V  CA +IEL  L GR  +
Sbjct:   91 DYEKEYGLDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGIVAGCAFLIELEGLNGRHAI 159

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_THEP1 (Adenine phosphoribosyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=apt PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.685e-30
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 1

Query:  115 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 360
            IR IPDFP+ GI+F+DIT LL + +AF++ ID   E   D++  +V   EARGFI G  +A  +G  FVP+RKP KLP + +
Sbjct:    7 IRDIPDFPQKGIVFRDITPLLRNQEAFKEAIDRMCELVSDRDFDLVVAPEARGFILGATMAYKLGKGFVPVRKPGKLPYKTV 88

HSP 2 Score: 70.8626 bits (172), Expect = 2.685e-30
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 2

Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            EEY LEYG + + +H  AV+ G+R LIVDD++ATGGT  A IRL++++G  VV  A ++EL  L+ R+ L
Sbjct:   90 EEYQLEYGTERLHIHEDAVEKGQRVLIVDDVLATGGTAEALIRLVKKLGGEVVSLAFLVELSYLEPRKRL 159

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_FRATW (Adenine phosphoribosyltransferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=apt PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.492e-30
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNI--SVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP 348
            I S I  +PDFPKPGIMF+DIT LL D +  R T +   +  K+K I  ++VAG E+RGFIFG  +A  +G  FVP+RKP KLP
Sbjct:    6 IKSKIAAVPDFPKPGIMFRDITPLLADPQGLRKTAEAMAQELKNKGIQPTIVAGTESRGFIFGVALAEVLGLGFVPVRKPGKLP 89

HSP 2 Score: 62.3882 bits (150), Expect = 3.492e-30
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 2

Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            +Y LEYG D +E+H  A +  +  L+VDDL+ATGGT  A + L+E+    V     V+EL  L GRE L
Sbjct:   96 KYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELDGLSGREVL 164

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_NITOC (Adenine phosphoribosyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=apt PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.494e-30
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + + IR IPDFPKPG++F+DIT L+ D    R  +   +  + +++I+ V GIEARGFIFG  +A  +G  F+P+RK  KLP EV S
Sbjct:    4 LKTKIRDIPDFPKPGVLFKDITPLVGDPATLRLAVHQLLHPFLEQDITAVGGIEARGFIFGALVAWELGVGFIPLRKSGKLPYEVRS 90

HSP 2 Score: 68.1662 bits (165), Expect = 3.494e-30
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  371 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPLGE 580
            Y LEYG   +E H  ++  G+  L+VDDL+ATGGT  A+  L+E +G  V  CA VIEL  L GRE L +
Sbjct:   93 YQLEYGSASLEAHTDSLGPGDNVLLVDDLLATGGTAKASCELVESLGATVAACAFVIELDFLHGRERLSD 162

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_MACCJ (Adenine phosphoribosyltransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=apt PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.494e-30
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1

Query:  115 IRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            I  + D+PKPG+ F+DITT++ +  A++   D  VE  K+K + +V G EARGFI G P+A A+   F P+RK  KLP EVIS
Sbjct:    7 ITQVKDWPKPGVNFKDITTIMDNGAAYKYATDQIVEYAKEKQVDIVVGPEARGFIIGCPVAYAMNIGFAPVRKKGKLPREVIS 89

HSP 2 Score: 70.8626 bits (172), Expect = 3.494e-30
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 2

Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            EY LEYG +V+ MH  A++ G+R LI DDL+ATGGT+ A I+L+E +G  V   A +I+L  L G E L
Sbjct:   91 EYELEYGTNVLTMHKDAIKPGQRVLITDDLLATGGTIEATIKLVESLGGIVAGIAFIIDLKYLNGMEKL 159

BLAST of FC925596 vs. ExPASy Swiss-Prot
Match: APT_STRA1 (Adenine phosphoribosyltransferase OS=Streptococcus agalactiae serotype Ia GN=apt PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.494e-30
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1

Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            +++ I  I ++P+ GI F+DI+ L+ D KA+   +   V+   DK+I ++ G EARGFI G P+A A+G  F P+RKP KLP EVIS
Sbjct:    3 LNNYIASIENYPQEGITFRDISPLMADGKAYSYAVREIVQYAADKDIDMIVGPEARGFIVGCPVAYALGIGFAPVRKPGKLPREVIS 89

HSP 2 Score: 72.4034 bits (176), Expect = 3.494e-30
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 2

Query:  371 YSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            Y  EYG D + MH  A++ G+R LIVDDL+ATGGT+ A I ++E++G  V  CA ++EL  L GR+ +
Sbjct:   92 YEKEYGLDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGVVAGCAFLVELDGLNGRKAI 159

The following BLAST results are available for this feature:

BLAST of FC925596 vs. ExPASy Swiss-Prot

BLAST of FC925596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
APT_STRPB	2.684e-30	45.98	Adenine phosphoribosyltransferase OS=Streptococcus...	[more]
APT_STRP8	2.684e-30	45.98	Adenine phosphoribosyltransferase OS=Streptococcus...	[more]
APT_STRP6	2.684e-30	45.98	Adenine phosphoribosyltransferase OS=Streptococcus...	[more]
APT_STRP3	2.684e-30	45.98	Adenine phosphoribosyltransferase OS=Streptococcus...	[more]
APT_STRP1	2.684e-30	45.98	Adenine phosphoribosyltransferase OS=Streptococcus...	[more]
APT_THEP1	2.685e-30	48.78	Adenine phosphoribosyltransferase OS=Thermotoga pe...	[more]
APT_FRATW	3.492e-30	53.57	Adenine phosphoribosyltransferase OS=Francisella t...	[more]
APT_NITOC	3.494e-30	47.13	Adenine phosphoribosyltransferase OS=Nitrosococcus...	[more]
APT_MACCJ	3.494e-30	48.19	Adenine phosphoribosyltransferase OS=Macrococcus c...	[more]
APT_STRA1	3.494e-30	45.98	Adenine phosphoribosyltransferase OS=Streptococcus...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP11YH06FM1 TF Citrus clementina cDNA clone KN0AAP11YH06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC925596 ID=FC925596; Name=FC925596; organism=Citrus clementina; type=EST; length=600bp
CACTGACTATAACTTGCGTTTTGAGTAGTGAGTGGTGACTCGACGCAACC
TCAACAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTG
GGATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATT
ATGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGA
TACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTG
TTGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTG
GCTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGG
GGAGGTTATTTCCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAATG
GAGATGCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGA
CGATCTAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTTG
AGCGAGTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCCA
GAGCTAAAGGGTCGGGAACCGCTGGGAGAGAAACCACTATTTGTTCCTGT